Bioconductor Pathway

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650

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pathway ORA limma CAMERA DGE

updated 8 months ago by Gordon Smyth 50k • written 8 months ago by manuelsokolov • 0

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928

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pathway SBGNview Reactome pathview PANTHER

written 3.1 years ago by Luo Weijun ★ 1.6k

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981

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pathway KEGGREST GSEA

updated 3.1 years ago by Kevin Blighe ★ 3.9k • written 3.1 years ago by MOHAMMAD • 0

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1.1k

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pathway KEGG annotation annotationhub

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by Bogdan ▴ 670

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4.7k

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R ClusterProfiler Enrichment Pathway

updated 11 months ago by Guido Hooiveld ★ 3.9k • written 4.0 years ago by t.b.kuipers • 0

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1.7k

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pathview kegg r pathway

4.5 years ago • updated 4.4 years ago AZ ▴ 30

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1.0k

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limma pathway

updated 4.7 years ago by mikhael.manurung ▴ 270 • written 4.7 years ago by Dario Strbenac ★ 1.5k

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781

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kegg pathway pathview

5.2 years ago Ahdee ▴ 50

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734

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IHW deseq2 Pathway

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by guidobarzaghi ▴ 20

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1.5k

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deseq2 pathway ihw

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by guidobarzaghi ▴ 20

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907

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igraph miR2Pathway Pathway page_rank

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by genomic8328 ▴ 10

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4.5k

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pathview KEGGgraph gage pathway pathway analysis

6.8 years ago Luo Weijun ★ 1.6k

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1.4k

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pathway paxtools

9.6 years ago Guido Leoni ▴ 200

13 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

That ll be helpful. Thank you.

Comment: Log-cpm values from limma by Shaimaa Gamal • 0

I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…

Comment: DSS CpG coverage threshold by j.gilbert • 0

Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Segmentation is of the whole genome, I'll write some code for doing this later today.

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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