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pcaExplorer
•
reset
0
votes
3
replies
757
views
Higher Dimensional RNASeq Clustering Significance
DESeq2
RNASeq
PrincipalComponent
pcaExplorer
written 17 months ago by
James
• 0
0
votes
3
replies
1.2k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 22 months ago by
Federico Marini
▴ 150 • written 22 months ago by
m610110001
• 0
5
votes
6
replies
2.5k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
2.1 years ago
Alan
• 0
4
votes
7
replies
1.9k
views
Updating org.Sc.sgd.db, and integration with topGO
GeneTonic
org.Sc.sgd.db
pcaExplorer
topGO
EnrichmentBrowser
updated 2.2 years ago by
Federico Marini
▴ 150 • written 2.2 years ago by
chase.mateusiak
• 0
9
votes
6
replies
28k
views
DESeq2 / PCA Analysis of RNA-seq Data - Best Explanatory Resource?
DESeq2
pcaExplorer
updated 3.2 years ago by
Michael Love
42k • written 3.2 years ago by
vanbelj
▴ 30
2
votes
4
replies
1.6k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 2.4 years ago by
Miguel
▴ 10 • written 3.7 years ago by
k.vitting.seerup
▴ 120
0
votes
7
replies
1.8k
views
go_bp table in custom OrgDb package
annotation
go
pcaExplorer
AnnotationForge
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
psutton
• 0
0
votes
1
reply
1.1k
views
PCA on deseq2 gene data set
pcaexplorer
genespca
deseq2
updated 6.5 years ago by
Michael Love
42k • written 6.5 years ago by
sally_b86
• 0
0
votes
8
replies
2.2k
views
pcaEcplorer PCA2go function crashing
pca2go
pcaexplorer
updated 6.7 years ago by
Federico Marini
▴ 150 • written 6.7 years ago by
reubenmcgregor88
• 0
1
vote
2
replies
1.3k
views
Error in pcaplot3d from pcaExplorer, when running Deseq2 since update of packages
deseq2
pcaexplorer
6.7 years ago
reubenmcgregor88
• 0
1
vote
2
replies
1.5k
views
pcaExplorer error displaying PCA plot
pcaExplorer
pca
updated 7.5 years ago by
Federico Marini
▴ 150 • written 7.5 years ago by
swaegers.janne
• 0
11 results • Page
1 of 1
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data
by
ATpoint
★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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