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pd.hta.2.0
•
reset
2
votes
13
replies
3.1k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
7.7 years ago • updated 7.2 years ago
s.munster
▴ 40
0
votes
2
replies
1.9k
views
Reading CEL files using Oligo and pd.hta.2.0 packages in Windows 7
oligo
pd.hta.2.0
CEL
R
windows 7
6.7 years ago
ladhikari
• 0
7
votes
16
replies
2.4k
views
Can "Glue Grant" arrays be processed with pd.hta.2.0?
pd.hta.2.0
ggh3
oligo
glue grant
updated 8.3 years ago by
James W. MacDonald
65k • written 8.3 years ago by
Robert Castelo
★ 3.3k
3
votes
3
replies
2.6k
views
Problem using RMA Method in 'Oligo' with HTAFeatureset Objects
affymetrix microarrays
microarray
pd.hta.2.0
oligo
rma
updated 8.1 years ago by
James W. MacDonald
65k • written 8.1 years ago by
jennifer.drake
• 0
9
votes
2
replies
2.4k
views
How to deal with Affymetrix GeneChip probeids that map to multiple genes
hta20sttranscriptcluster.db
probe mapping
annotation
pd.hta.2.0
annotationdbi
updated 7.6 years ago by
James W. MacDonald
65k • written 7.6 years ago by
relathman
▴ 20
0
votes
2
replies
1.5k
views
pd.hta.2.0 not installed with Bioconductor 3.5 BiocInstaller 1.26.0 R 3.4.1
package installation
pd.hta.2.0
6.7 years ago
alexander2073
• 0
0
votes
1
reply
1.5k
views
HTA analysis at transcript level
pd.hta.2.0
transcript
differential gene expression
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
jacorvar
▴ 40
2
votes
3
replies
1.5k
views
Filtering of lowly expressed probes in HTA 2.0 using new pd.hta.2.0 version 3.12.2
pd.hta.2.0
hta2.0
affycoretools
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
relathman
▴ 20
3
votes
3
replies
1.3k
views
Trouble annotating HTA microarray
hta
pd.hta.2.0
hta20sttranscriptcluster.db
updated 7.8 years ago by
James W. MacDonald
65k • written 7.8 years ago by
giroudpaul
▴ 40
3
votes
5
replies
2.2k
views
Fail to install "AnnotationHub"
software error
annotation
genefilter
pd.hta.2.0
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
Lian Liu
▴ 20
5
votes
9
replies
5.6k
views
Pre-processing of HTA 2.0 array
pd.hta.2.0
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
pbachali
▴ 50
0
votes
5
replies
1.1k
views
pd.hta.2.0 oddity, possible RSQLite bug?
oligo
rsqlite
pd.hta.2.0
updated 7.6 years ago by
James W. MacDonald
65k • written 7.6 years ago by
Vincent J. Carey, Jr.
6.7k
1
vote
0
replies
2.3k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo
pdInfoBuilder
pd.hta.2.0
8.8 years ago
tangboyun
▴ 30
13 results • Page
1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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