Bioconductor Proteomics

Showing : proteomics • reset

votes

replies

126

views

DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq

updated 3 days ago by ATpoint ★ 4.1k • written 3 days ago by james.zhang20 • 0

votes

replies

222

views

Proteomics JobPosting SingleCell Spatial SpatialExperiment

8 weeks ago Peter Hickey ▴ 740

votes

replies

3.8k

views

Proteomics NPX limma

updated 3 months ago by briankleiboeker • 0 • written 3.1 years ago by r.i.s.alnuwaysir ▴ 10

votes

2.2k

views

mass spectrometry proteomics metabolomics Tutorial

written 3.6 years ago by Johannes Rainer ★ 2.0k

votes

201

views

Proteomics ProteoMM ProteomicsWorkflow Proteome

written 5 months ago by ary.lech ▴ 10

votes

replies

244

views

Bioconductor Proteomics

5 months ago Joshua • 0

vote

1.4k

views

RNAseq deseq2 proteomics transcriptomics workshop News

written 5.2 years ago by Laurent Gatto 1.6k

vote

replies

750

views

Proteomics proDA MultipleComparison

8 months ago t.b.n.nguyen-9 • 0

vote

replies

453

views

Proteomics DifferentialRegulation limma

8 months ago svlachavas ▴ 830

votes

replies

2.9k

views

differential expression proteomics

updated 8 months ago by ATpoint ★ 4.1k • written 6.3 years ago by cardin.julie • 0

votes

replies

742

views

RforProteomics Proteomics ProteomicsWorkflow

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

votes

613

views

Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

votes

replies

797

views

Proteomics ProteoMM ProteomicsWorkflow

updated 9 months ago by mmvar • 0 • written 11 months ago by nkvnambiar • 0

votes

replies

1.8k

views

Proteomics DEP limma

written 2.8 years ago by barrypraveen • 0

14 results • Page 1 of 1

Recent ...

Replies

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Comment: fgsea significant result by Chris • 0

Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

Awards • All