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pwmenrich
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920
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How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
6.9 years ago
intregen
• 0
0
votes
0
replies
1.0k
views
makeBackground error message "Sequence only contain N's"
pwmenrich
7.6 years ago
gdeniz
• 0
0
votes
1
reply
1.2k
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
7.8 years ago
amanda.joy.price
▴ 10
0
votes
0
replies
1.0k
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
7.9 years ago
prp291
• 0
0
votes
1
reply
2.5k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 9.3 years ago by
Ou, Jianhong
★ 1.3k • written 9.3 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.3k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
9.4 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
2.4k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 9.7 years ago by
Robert Stojnic
▴ 50 • written 9.7 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.7k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
9.8 years ago
enricoferrero
▴ 680
0
votes
3
replies
2.0k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
10.1 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.6k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 10.1 years ago by
Robert Stojnic
▴ 50 • written 10.1 years ago by
elliott77
• 0
2
votes
1
reply
1.5k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 10.3 years ago by
Robert Stojnic
▴ 50 • written 10.3 years ago by
enricoferrero
▴ 680
1
vote
3
replies
1.9k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
10.3 years ago
oliwindram
▴ 10
0
votes
5
replies
3.2k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 11.3 years ago by
Robert Stojnic
▴ 80 • written 11.3 years ago by
deepti anand
▴ 50
0
votes
0
replies
1.0k
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
11.5 years ago
enricoferrero
▴ 680
0
votes
8
replies
2.2k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 12.0 years ago by
Robert Stojnic
▴ 80 • written 12.0 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.6k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 12.3 years ago by
Robert Stojnic
▴ 50 • written 12.3 years ago by
Guest User
★ 13k
16 results • Page
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Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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