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pwmenrich
•
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0
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760
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How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
6.0 years ago
intregen
• 0
0
votes
0
replies
890
views
makeBackground error message "Sequence only contain N's"
pwmenrich
6.7 years ago • updated 6.6 years ago
gdeniz
• 0
0
votes
1
reply
970
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
6.8 years ago
amanda.joy.price
▴ 10
0
votes
0
replies
809
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
6.9 years ago
prp291
• 0
0
votes
1
reply
2.1k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 8.3 years ago by
Ou, Jianhong
★ 1.3k • written 8.3 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.1k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
8.4 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
2.0k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.8 years ago by
Robert Stojnic
▴ 50 • written 8.8 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.5k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.8 years ago
enricoferrero
▴ 660
0
votes
3
replies
1.6k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
9.1 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.4k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 9.1 years ago by
Robert Stojnic
▴ 50 • written 9.1 years ago by
elliott77
• 0
2
votes
1
reply
1.2k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 9.3 years ago by
Robert Stojnic
▴ 50 • written 9.3 years ago by
enricoferrero
▴ 660
1
vote
3
replies
1.6k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
9.4 years ago • updated 9.3 years ago
oliwindram
▴ 10
0
votes
5
replies
2.8k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 10.3 years ago by
Robert Stojnic
▴ 80 • written 10.3 years ago by
deepti anand
▴ 50
0
votes
0
replies
894
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
10.5 years ago
enricoferrero
▴ 660
0
votes
8
replies
1.8k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 11.1 years ago by
Robert Stojnic
▴ 80 • written 11.1 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.4k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 11.3 years ago by
Robert Stojnic
▴ 50 • written 11.3 years ago by
Guest User
★ 13k
16 results • Page
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character
by
ATpoint
★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format
by
ControlF5
• 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open!
by
Alan Downey
• 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
by
O'Brien
• 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts
by
O'Brien
• 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
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Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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