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pwmenrich
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903
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How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
6.8 years ago
intregen
• 0
0
votes
0
replies
1.0k
views
makeBackground error message "Sequence only contain N's"
pwmenrich
7.5 years ago
gdeniz
• 0
0
votes
1
reply
1.2k
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
7.7 years ago
amanda.joy.price
▴ 10
0
votes
0
replies
1.0k
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
7.8 years ago
prp291
• 0
0
votes
1
reply
2.5k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 9.2 years ago by
Ou, Jianhong
★ 1.3k • written 9.2 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.3k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
9.3 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
2.3k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 9.6 years ago by
Robert Stojnic
▴ 50 • written 9.6 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.6k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
9.7 years ago
enricoferrero
▴ 680
0
votes
3
replies
1.9k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
10.0 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.6k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 10.0 years ago by
Robert Stojnic
▴ 50 • written 10.0 years ago by
elliott77
• 0
2
votes
1
reply
1.5k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 10.2 years ago by
Robert Stojnic
▴ 50 • written 10.2 years ago by
enricoferrero
▴ 680
1
vote
3
replies
1.9k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
10.2 years ago
oliwindram
▴ 10
0
votes
5
replies
3.1k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 11.2 years ago by
Robert Stojnic
▴ 80 • written 11.2 years ago by
deepti anand
▴ 50
0
votes
0
replies
1.0k
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
11.4 years ago
enricoferrero
▴ 680
0
votes
8
replies
2.1k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 11.9 years ago by
Robert Stojnic
▴ 80 • written 11.9 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.5k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 12.2 years ago by
Robert Stojnic
▴ 50 • written 12.2 years ago by
Guest User
★ 13k
16 results • Page
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
by
Matthew Thornton
▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated
by
RalphSavage99
• 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2
by
shepherl
4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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