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pwmenrich
•
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746
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How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
5.9 years ago
intregen
• 0
0
votes
0
replies
868
views
makeBackground error message "Sequence only contain N's"
pwmenrich
6.5 years ago
gdeniz
• 0
0
votes
1
reply
951
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
6.7 years ago
amanda.joy.price
▴ 10
0
votes
0
replies
794
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
6.8 years ago
prp291
• 0
0
votes
1
reply
2.1k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 8.2 years ago by
Ou, Jianhong
★ 1.3k • written 8.2 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.1k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
8.3 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
2.0k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.7 years ago by
Robert Stojnic
▴ 50 • written 8.7 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.4k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.7 years ago
enricoferrero
▴ 660
0
votes
3
replies
1.6k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
9.0 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.4k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 9.0 years ago by
Robert Stojnic
▴ 50 • written 9.0 years ago by
elliott77
• 0
2
votes
1
reply
1.2k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 9.2 years ago by
Robert Stojnic
▴ 50 • written 9.2 years ago by
enricoferrero
▴ 660
1
vote
3
replies
1.6k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
9.2 years ago
oliwindram
▴ 10
0
votes
5
replies
2.7k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 10.2 years ago by
Robert Stojnic
▴ 80 • written 10.2 years ago by
deepti anand
▴ 50
0
votes
0
replies
882
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
10.4 years ago
enricoferrero
▴ 660
0
votes
8
replies
1.8k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 11.0 years ago by
Robert Stojnic
▴ 80 • written 11.0 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.3k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 11.2 years ago by
Robert Stojnic
▴ 50 • written 11.2 years ago by
Guest User
★ 13k
16 results • Page
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Comment: preprocessIllumina error with EPICv2 array
by
Rakesh
• 0
Amazing, thanks for the help!
Answer: Allele frequencies for ALL alleles of one SNP ?
by
Robert Castelo
★ 3.4k
Hi, the [GenomicScores](https://bioconductor.org/packages/GenomicSCores) package provides supporting infrastructure to create annotation re…
Answer: preprocessIllumina error with EPICv2 array
by
James W. MacDonald
67k
You shouldn't need to change the annotation, and certainly not like that. You should never need to use the `@` function directly - there ar…
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
by
Haibo Liu
• 0
Thank you for your reminder. I did forget that, but I just bumped the version to 1.1.1.
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
by
shepherl
4.1k
@haibol2017-23658 make sure you have the valid version bump in the description on our git repository in order for the new version to propa…
Votes
Answer: preprocessIllumina error with EPICv2 array
Answer: preprocessIllumina error with EPICv2 array
Answer: UniProt.ws query loading indefinitely
Answer: Package needs internet access
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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Ahdee
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