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pwmenrich
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783
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How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
6.1 years ago
intregen
• 0
0
votes
0
replies
915
views
makeBackground error message "Sequence only contain N's"
pwmenrich
6.8 years ago
gdeniz
• 0
0
votes
1
reply
1000
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
7.0 years ago • updated 6.9 years ago
amanda.joy.price
▴ 10
0
votes
0
replies
827
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
7.1 years ago
prp291
• 0
0
votes
1
reply
2.2k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 8.5 years ago by
Ou, Jianhong
★ 1.3k • written 8.5 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.2k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
8.6 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
2.1k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.9 years ago by
Robert Stojnic
▴ 50 • written 8.9 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.5k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
9.0 years ago
enricoferrero
▴ 680
0
votes
3
replies
1.7k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
9.3 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.4k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 9.3 years ago by
Robert Stojnic
▴ 50 • written 9.3 years ago by
elliott77
• 0
2
votes
1
reply
1.3k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 9.5 years ago by
Robert Stojnic
▴ 50 • written 9.5 years ago by
enricoferrero
▴ 680
1
vote
3
replies
1.7k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
9.5 years ago
oliwindram
▴ 10
0
votes
5
replies
2.8k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 10.5 years ago by
Robert Stojnic
▴ 80 • written 10.5 years ago by
deepti anand
▴ 50
0
votes
0
replies
913
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
10.6 years ago
enricoferrero
▴ 680
0
votes
8
replies
1.9k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 11.2 years ago by
Robert Stojnic
▴ 80 • written 11.2 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.4k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 11.5 years ago by
Robert Stojnic
▴ 50 • written 11.5 years ago by
Guest User
★ 13k
16 results • Page
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Answer: Plot title for PCA in DESeq2
by
ATpoint
★ 4.7k
The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.
Comment: DESeq2 It is correct to use interaction term for patient variability?
by
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• 0
I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…
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It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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