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HISAT2 mapping
hisat2
results
updated 13 months ago by
ATpoint
★ 4.1k • written 13 months ago by
ali
• 0
0
votes
1
reply
2.2k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 19 months ago by
Michael Love
42k • written 19 months ago by
Chiara
• 0
1
vote
2
replies
2.9k
views
error in DESeq2 results(dds)
DESeq2
datasetfrommatrix
results
error
3.2 years ago
james
• 0
3
votes
6
replies
2.3k
views
DESEq2 - How to extract ONE results table/coefficient from the DESeqResults object
deseq2
results
DESeqResults
updated 3.7 years ago by
Michael Love
42k • written 3.7 years ago by
paula.vaccarello
• 0
2
votes
2
replies
820
views
DESeq results gives all genes
deseq2
design matrix
results
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
evocanres
• 0
0
votes
1
reply
906
views
Basemean always multiples of 0.5 in deseq2 results
deseq
results
baseMean
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
batmaiden
• 0
0
votes
3
replies
1.1k
views
A contrast with four simultaneous conditions for DESeq2?
DESeq2
contrast
results
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
jan.soderman
• 0
1
vote
3
replies
1.0k
views
Results counts post DESeq same raw counts
DESeq2
results
updated 6.1 years ago by
Michael Love
42k • written 6.1 years ago by
A
▴ 40
0
votes
0
replies
777
views
[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO()
results
6.1 years ago
414457044
• 0
0
votes
5
replies
1.2k
views
results {DESeq2} parameters
deseq2
results
updated 6.2 years ago by
Michael Love
42k • written 6.2 years ago by
Aurora
▴ 20
2
votes
5
replies
1.6k
views
DEGs generation parameters and specificities
deseq2
results
design and contrast matrix
updated 6.5 years ago by
Michael Love
42k • written 7.1 years ago by
tarun2
• 0
2
votes
4
replies
1.3k
views
Tac and Bioconductor giving different results
Tac
bioconductor
results
reproducbiltiy
updated 6.5 years ago by
Steve Lianoglou
★ 13k • written 6.5 years ago by
kritikamish99
▴ 10
3
votes
2
replies
3.4k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2
results
error
6.6 years ago
hs.lansdell
▴ 20
2
votes
8
replies
1.4k
views
Deseq2 result for a variable
deseq2
differential expression
results
updated 6.6 years ago by
Michael Love
42k • written 6.6 years ago by
yoursbassanio
▴ 10
2
votes
5
replies
5.3k
views
DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2
results
contrast
padj
updated 6.9 years ago by
Michael Love
42k • written 6.9 years ago by
courtney.stairs
• 0
2
votes
5
replies
3.2k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
bhgyu
▴ 30
1
vote
6
replies
1.9k
views
DESeq2: relevel contrasts after DESeq() has been called (time-course experiment of Drosophila development)
drosophila melanogaster
multiple time points
deseq2
results
development
updated 7.2 years ago by
Michael Love
42k • written 7.2 years ago by
wariobrega
• 0
4
votes
4
replies
1.9k
views
Deseq2 results interpretation
deseq2
multiple factor design
results
8.0 years ago
koeniger
▴ 10
5
votes
6
replies
18k
views
Group comparison in DESeq2
deseq2
results
updated 8.7 years ago by
Michael Love
42k • written 8.7 years ago by
jjinhyoungkim
▴ 20
6
votes
2
replies
4.8k
views
All same padj of contrast results in the DESeq2
deseq2
padj
contrast
results
updated 8.8 years ago by
Michael Love
42k • written 8.8 years ago by
jjinhyoungkim
▴ 20
0
votes
3
replies
2.1k
views
Getting different results with DESeq2
deseq2
results
rstudio
updated 8.8 years ago by
Michael Love
42k • written 8.8 years ago by
Lillyhchen
▴ 10
5
votes
4
replies
3.5k
views
limma multiple rows per gene in output (write.fit)
limma
results
8.9 years ago
Anne
• 0
2
votes
15
replies
3.1k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
9.1 years ago • updated 9.0 years ago
mnaymik
▴ 10
23 results • Page
1 of 1
Recent ...
Replies
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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