Bioconductor Rmarkdown

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rmarkdown suppressWarning warning

updated 2.7 years ago by Mike Smith ★ 6.6k • written 3.9 years ago by Wolfgang Huber ★ 13k

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1.6k

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ReportingTools RNA-Seq RMarkdown

updated 5.2 years ago by James W. MacDonald 68k • written 5.2 years ago by anthony.nash ▴ 20

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929

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BiocWorkflowTools rmarkdown

5.4 years ago helucro ▴ 70

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2.1k

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BrowseSeqs DECIPHER notebook rmarkdown

updated 6.2 years ago by Erik Wright ▴ 150 • written 6.2 years ago by lauren.fitch • 0

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1.5k

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rmarkdown knitr

updated 6.7 years ago by Aaron Lun ★ 29k • written 6.7 years ago by Keith Hughitt ▴ 180

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4.4k

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package development bioconductor rstudio rmarkdown vignettes

8.0 years ago clarisbaby • 0

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3.7k

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BiocStyle vignettes rmarkdown latex News

8.2 years ago Andrzej Oleś ▴ 750

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3.9k

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biocstyle Rmarkdown Tutorial

8.3 years ago Wolfgang Huber ★ 13k

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2.3k

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BiocWorkflowTools rmarkdown

updated 8.4 years ago by Andrzej Oleś ▴ 750 • written 8.4 years ago by Leonardo Collado Torres ★ 1.1k

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17k

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rmarkdown rstudio knitr

9.1 years ago Jon Bråte ▴ 270

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3.9k

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rmarkdown package updates

updated 9.2 years ago by James W. MacDonald 68k • written 9.2 years ago by tarek.mohamed ▴ 10

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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