Bioconductor Rna seq

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4.0k

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deseq2 mahattan plot RNA Seq

updated 4.9 years ago by bernatgel ▴ 150 • written 5.9 years ago by adeler001 • 0

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4.8k

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batch effect limma rna seq DE

updated 5.4 years ago by Steve Lianoglou ★ 13k • written 5.4 years ago by svlachavas ▴ 840

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1.4k

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RNA seq cpm

updated 5.4 years ago by Kevin Blighe ★ 4.0k • written 5.4 years ago by isabel.pieterse • 0

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1.4k

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sgseq alternative splicing rna seq

updated 13 months ago by Sara • 0 • written 5.8 years ago by 116100016 • 0

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1.3k

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edger RNA Seq

updated 5.8 years ago by James W. MacDonald 68k • written 5.8 years ago by abf ▴ 30

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783

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rna seq

5.8 years ago adeler001 • 0

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1.3k

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rna seq SGSeq Alternative splicing

updated 5.9 years ago by Leonard Goldstein ▴ 260 • written 5.9 years ago by 116100016 • 0

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783

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deseq2 likelihood ratio rna seq wald test

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by adeler001 • 0

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1.3k

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volcano plot rna seq

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by adeler001 • 0

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1.7k

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limma voom RNA Seq Time-course experiments

updated 6.2 years ago by Aaron Lun ★ 29k • written 6.2 years ago by mahes.muniandy • 0

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1.6k

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RNA seq wgcna

updated 6.3 years ago by Peter Langfelder ★ 3.0k • written 6.3 years ago by agustin.gonvi ▴ 20

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2.6k

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rna seq trimmomatic trimming adapter trimming paired analysis

6.3 years ago Mozart ▴ 30

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2.1k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

7.5 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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Popular Question to Robert Castelo ★ 3.4k