Bioconductor Rna seq

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3.6k

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deseq2 mahattan plot RNA Seq

updated 4.4 years ago by bernatgel ▴ 150 • written 5.4 years ago by adeler001 • 0

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4.2k

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batch effect limma rna seq DE

updated 4.9 years ago by Steve Lianoglou ★ 13k • written 4.9 years ago by svlachavas ▴ 840

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1.2k

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RNA seq cpm

updated 5.0 years ago by Kevin Blighe ★ 4.0k • written 5.0 years ago by isabel.pieterse • 0

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1.3k

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sgseq alternative splicing rna seq

updated 7 months ago by Sara • 0 • written 5.3 years ago by 116100016 • 0

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1.2k

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edger RNA Seq

updated 5.3 years ago by James W. MacDonald 68k • written 5.3 years ago by abf ▴ 30

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699

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rna seq

5.4 years ago adeler001 • 0

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1.1k

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rna seq SGSeq Alternative splicing

updated 5.4 years ago by Leonard Goldstein ▴ 260 • written 5.4 years ago by 116100016 • 0

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721

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deseq2 likelihood ratio rna seq wald test

updated 5.5 years ago by Michael Love 43k • written 5.5 years ago by adeler001 • 0

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1.2k

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volcano plot rna seq

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by adeler001 • 0

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1.6k

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limma voom RNA Seq Time-course experiments

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by mahes.muniandy • 0

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1.4k

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RNA seq wgcna

updated 5.8 years ago by Peter Langfelder ★ 3.0k • written 5.8 years ago by agustin.gonvi ▴ 20

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2.5k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.9 years ago Mozart ▴ 30

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2.0k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

7.1 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

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Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

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