Bioconductor Rna seq

Showing : rna seq • reset

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3.2k

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deseq2 mahattan plot RNA Seq

updated 4.1 years ago by bernatgel ▴ 150 • written 5.1 years ago by adeler001 • 0

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3.8k

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batch effect limma rna seq DE

updated 4.6 years ago by Steve Lianoglou ★ 13k • written 4.6 years ago by svlachavas ▴ 830

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904

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RNA seq cpm

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by isabel.pieterse • 0

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1.1k

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sgseq alternative splicing rna seq

updated 3 months ago by Sara • 0 • written 5.0 years ago by 116100016 • 0

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1.1k

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edger RNA Seq

updated 5.0 years ago by James W. MacDonald 67k • written 5.0 years ago by abf ▴ 30

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642

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rna seq

5.0 years ago adeler001 • 0

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964

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rna seq SGSeq Alternative splicing

updated 5.1 years ago by Leonard Goldstein ▴ 260 • written 5.1 years ago by 116100016 • 0

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664

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deseq2 likelihood ratio rna seq wald test

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by adeler001 • 0

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1.1k

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volcano plot rna seq

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by adeler001 • 0

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1.5k

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limma voom RNA Seq Time-course experiments

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by mahes.muniandy • 0

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1.2k

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RNA seq wgcna

updated 5.5 years ago by Peter Langfelder ★ 3.0k • written 5.5 years ago by agustin.gonvi ▴ 20

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2.2k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.6 years ago Mozart ▴ 30

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1.8k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

6.8 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Votes

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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