Bioconductor Rna seq

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deseq2 mahattan plot RNA Seq

updated 4.5 years ago by bernatgel ▴ 150 • written 5.5 years ago by adeler001 • 0

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batch effect limma rna seq DE

updated 5.0 years ago by Steve Lianoglou ★ 13k • written 5.0 years ago by svlachavas ▴ 840

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RNA seq cpm

updated 5.0 years ago by Kevin Blighe ★ 4.0k • written 5.0 years ago by isabel.pieterse • 0

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sgseq alternative splicing rna seq

updated 8 months ago by Sara • 0 • written 5.4 years ago by 116100016 • 0

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edger RNA Seq

updated 5.4 years ago by James W. MacDonald 68k • written 5.4 years ago by abf ▴ 30

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717

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rna seq

5.4 years ago adeler001 • 0

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1.2k

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rna seq SGSeq Alternative splicing

updated 5.5 years ago by Leonard Goldstein ▴ 260 • written 5.5 years ago by 116100016 • 0

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732

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deseq2 likelihood ratio rna seq wald test

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by adeler001 • 0

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volcano plot rna seq

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by adeler001 • 0

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limma voom RNA Seq Time-course experiments

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by mahes.muniandy • 0

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RNA seq wgcna

updated 5.9 years ago by Peter Langfelder ★ 3.0k • written 5.9 years ago by agustin.gonvi ▴ 20

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rna seq trimmomatic trimming adapter trimming paired analysis

6.0 years ago Mozart ▴ 30

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heatmap.2 hierarchical clustering microarray RNA seq DEG

7.2 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0

`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/

Comment: error in ChAMP loading file by janwilseo • 0

Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…

Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

Comment: DESeq2 Design controlling for gender by donnycrimson • 0

On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…

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DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

A: Unbalanced experiment with multiple samples from each patient.

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Popular Question to Dario Strbenac ★ 1.6k