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rna seq
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9
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3.5k
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How to create manhattan plot with DESeq2
deseq2
mahattan plot
RNA Seq
updated 4.3 years ago by
bernatgel
▴ 150 • written 5.3 years ago by
adeler001
• 0
2
votes
5
replies
4.1k
views
Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect
limma
rna seq
DE
updated 4.8 years ago by
Steve Lianoglou
★ 13k • written 4.8 years ago by
svlachavas
▴ 840
0
votes
3
replies
1.0k
views
Normalization of RNA seq data
RNA seq
cpm
updated 4.9 years ago by
Kevin Blighe
★ 4.0k • written 4.9 years ago by
isabel.pieterse
• 0
4
votes
4
replies
1.2k
views
Custom gene annotations for SGSeq
sgseq
alternative splicing
rna seq
updated 6 months ago by
Sara
• 0 • written 5.2 years ago by
116100016
• 0
1
vote
4
replies
1.1k
views
Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger
RNA Seq
updated 5.2 years ago by
James W. MacDonald
68k • written 5.2 years ago by
abf
▴ 30
0
votes
0
replies
678
views
searching for specific RNA sequences
rna seq
5.3 years ago
adeler001
• 0
0
votes
2
replies
1.1k
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq
SGSeq
Alternative splicing
updated 5.3 years ago by
Leonard Goldstein
▴ 260 • written 5.3 years ago by
116100016
• 0
0
votes
1
reply
701
views
51 views DESeq2 RNAseq differential expression analysis
deseq2
likelihood ratio
rna seq
wald test
updated 5.4 years ago by
Michael Love
43k • written 5.4 years ago by
adeler001
• 0
0
votes
2
replies
1.2k
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot
rna seq
updated 5.5 years ago by
Michael Love
43k • written 5.5 years ago by
adeler001
• 0
1
vote
5
replies
1.6k
views
Time course experiment using limma with voom
limma
voom
RNA Seq
Time-course experiments
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
mahes.muniandy
• 0
5
votes
3
replies
1.3k
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq
wgcna
updated 5.7 years ago by
Peter Langfelder
★ 3.0k • written 5.7 years ago by
agustin.gonvi
▴ 20
1
vote
2
replies
2.4k
views
adapter trimming paired vs unpaired reads
rna seq
trimmomatic
trimming
adapter trimming
paired analysis
5.8 years ago
Mozart
▴ 30
0
votes
0
replies
1.9k
views
Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2
hierarchical clustering
microarray
RNA seq
DEG
7.0 years ago
lawarde.ankita1
▴ 30
13 results • Page
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Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
It seems likely this was installed as an admin account and a user account would not be able to update. Someone with admin access should run…
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
by
James W. MacDonald
68k
Any query over the internet can vary in the time to completion due to the vagaries of the connection you may have. I just tried your query …
Answer: batch effect removal for agilent microarray data
by
James W. MacDonald
68k
If all of the samples in group 155 are one type, and all the other samples in 438 are the other, then no. The biological and technical vari…
Answer: Automatically install dependencies
by
shepherl
4.1k
Since `BiocManager::install` is a wrapper around `install.packages` you should be able to use the dependencies argument. Default is the de…
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Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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