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rna seq
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9
replies
4.0k
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How to create manhattan plot with DESeq2
deseq2
mahattan plot
RNA Seq
updated 5.0 years ago by
bernatgel
▴ 150 • written 6.0 years ago by
adeler001
• 0
2
votes
5
replies
4.8k
views
Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect
limma
rna seq
DE
updated 5.5 years ago by
Steve Lianoglou
★ 13k • written 5.5 years ago by
svlachavas
▴ 840
0
votes
3
replies
1.4k
views
Normalization of RNA seq data
RNA seq
cpm
updated 5.5 years ago by
Kevin Blighe
★ 4.0k • written 5.5 years ago by
isabel.pieterse
• 0
4
votes
4
replies
1.4k
views
Custom gene annotations for SGSeq
sgseq
alternative splicing
rna seq
updated 14 months ago by
Sara
• 0 • written 5.9 years ago by
116100016
• 0
1
vote
4
replies
1.3k
views
Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger
RNA Seq
updated 5.9 years ago by
James W. MacDonald
68k • written 5.9 years ago by
abf
▴ 30
0
votes
0
replies
793
views
searching for specific RNA sequences
rna seq
5.9 years ago
adeler001
• 0
0
votes
2
replies
1.3k
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq
SGSeq
Alternative splicing
updated 6.0 years ago by
Leonard Goldstein
▴ 260 • written 6.0 years ago by
116100016
• 0
0
votes
1
reply
798
views
51 views DESeq2 RNAseq differential expression analysis
deseq2
likelihood ratio
rna seq
wald test
updated 6.1 years ago by
Michael Love
43k • written 6.1 years ago by
adeler001
• 0
0
votes
2
replies
1.4k
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot
rna seq
updated 6.1 years ago by
Michael Love
43k • written 6.1 years ago by
adeler001
• 0
1
vote
5
replies
1.8k
views
Time course experiment using limma with voom
limma
voom
RNA Seq
Time-course experiments
updated 6.3 years ago by
Aaron Lun
★ 29k • written 6.3 years ago by
mahes.muniandy
• 0
5
votes
3
replies
1.7k
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq
wgcna
updated 6.3 years ago by
Peter Langfelder
★ 3.0k • written 6.3 years ago by
agustin.gonvi
▴ 20
1
vote
2
replies
2.7k
views
adapter trimming paired vs unpaired reads
rna seq
trimmomatic
trimming
adapter trimming
paired analysis
6.4 years ago
Mozart
▴ 30
0
votes
0
replies
2.1k
views
Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2
hierarchical clustering
microarray
RNA seq
DEG
7.6 years ago
lawarde.ankita1
▴ 30
13 results • Page
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Replies
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20
by
eja.gaasa2e.r.m
• 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Answer: Gatins Set error
by
James W. MacDonald
68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Votes
Comment: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
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