Showing : rna seq • reset
2
votes
5
replies
3.2k
views
Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect limma rna seq DE
updated 4.0 years ago by ★ 13k • written 4.0 years ago by ▴ 830
0
votes
9
replies
2.6k
views
How to create manhattan plot with DESeq2
deseq2 mahattan plot RNA Seq
updated 3.6 years ago by ▴ 150 • written 4.5 years ago by • 0
1
vote
2
replies
1.9k
views
adapter trimming paired vs unpaired reads
rna seq trimmomatic trimming adapter trimming paired analysis
5.0 years ago Mozart ▴ 30
0
votes
0
replies
1.6k
views
Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2 hierarchical clustering microarray RNA seq DEG
6.2 years ago lawarde.ankita1 ▴ 30
1
vote
5
replies
1.3k
views
Time course experiment using limma with voom
limma voom RNA Seq Time-course experiments
updated 4.9 years ago by ★ 28k • written 4.9 years ago by • 0
5
votes
3
replies
962
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq wgcna
updated 4.9 years ago by ★ 3.0k • written 4.9 years ago by ▴ 20
0
votes
2
replies
946
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot rna seq
updated 4.7 years ago by 41k • written 4.7 years ago by • 0
1
vote
4
replies
893
views
Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger RNA Seq
updated 4.4 years ago by 65k • written 4.4 years ago by ▴ 30
3
votes
3
replies
885
views
Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 4.4 years ago by ▴ 200 • written 4.4 years ago by • 0
0
votes
2
replies
776
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 4.5 years ago by ▴ 200 • written 4.5 years ago by • 0
0
votes
3
replies
649
views
Normalization of RNA seq data
RNA seq cpm
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
0
votes
1
reply
550
views
51 views DESeq2 RNAseq differential expression analysis
deseq2 likelihood ratio rna seq wald test
updated 4.6 years ago by 41k • written 4.6 years ago by • 0
0
votes
0
replies
496
views
searching for specific RNA sequences
rna seq
4.5 years ago adeler001 • 0
13 results • Page 1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Votes
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Awards • All
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Popular Question to shepherl 3.9k
Locations • All
United States, just now
Sweden, 5 minutes ago
France, 12 minutes ago
United States, 18 minutes ago
Belgium, 21 minutes ago
Traffic: 735 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6