Bioconductor Rnaseq123

Showing : rnaseq123 • reset

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4.4k

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voom htseq edgeR limma RNASeq123

updated 5.3 years ago by Gordon Smyth 50k • written 6.9 years ago by wd ▴ 30

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4.4k

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RNAseq123

written 3.3 years ago by mmicky5050 • 0

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3.2k

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RNAseq123

17 months ago afsanarupa1 • 0

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2.4k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.1 years ago • updated 2.0 years ago Alan • 0

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1.5k

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 18 months ago by James W. MacDonald 65k • written 18 months ago by Mohamed ▴ 30

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1.3k

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RNAseq123

updated 3 months ago by difraiadomenico • 0 • written 3.2 years ago by demirkalecy ▴ 10

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1.0k

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edgeR RNAseq123

updated 17 months ago by Gordon Smyth 50k • written 17 months ago by Istvan Albert ▴ 50

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1.0k

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RNAseq123 Rna

updated 23 months ago by Gordon Smyth 50k • written 23 months ago by Mikołaj Mierzejewski • 0

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825

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DESeq2 RNAseq123 rnaseq deseq2 metatranscriptomic

updated 16 months ago by Michael Love 41k • written 16 months ago by irish.prg • 0

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814

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snpeff python tophat r RNAseq123

updated 2.8 years ago by Kevin Blighe ★ 3.9k • written 2.8 years ago by kusum • 0

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711

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RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 19 months ago by ATpoint ★ 4.1k • written 20 months ago by Mohamed ▴ 30

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550

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RNAseq123

21 months ago Mohamed ▴ 30

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542

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DESeq2 RNAseq123

14 months ago fatemeh.peimani • 0

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507

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CircularRNA RNASeq RNAseq123

3.2 years ago rpokhre2 • 0

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334

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RNASeqData RNAseq123

updated 5 months ago by ATpoint ★ 4.1k • written 5 months ago by kaurprab • 0

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168

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RNAseq123

updated 9 days ago by Gordon Smyth 50k • written 13 days ago by Lluís Revilla Sancho ▴ 730

16 results • Page 1 of 1

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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k