Bioconductor Rnaseqdtu

Showing : rnaseqdtu • reset

votes

replies

903

views

rnaseqDTU DRIMSeq

2.5 years ago • updated 2.4 years ago wangziwei0010 ▴ 10

vote

replies

1.6k

views

rnaseqDTU

2.7 years ago • updated 2.6 years ago ksong ▴ 10

votes

replies

1.6k

views

DEXSeq rnaseqDTU

3.3 years ago rbenel ▴ 40

votes

replies

1.5k

views

RNA-seq DRIMSeq DEXSeq rnaseqDTU

3.4 years ago bioinformatic_trainee ▴ 10

votes

744

views

rnaseqDTU

updated 4.1 years ago by Michael Love 43k • written 4.1 years ago by rohitsatyam102 ▴ 20

votes

849

views

rnaseqdtu RNASeq DEXSeq DESeq2

updated 4.5 years ago by Michael Love 43k • written 4.5 years ago by debatosh das ▴ 10

votes

replies

849

views

rnaseqDTU

updated 4.6 years ago by Michael Love 43k • written 4.6 years ago by dixit.anirudha • 0

votes

replies

1.0k

views

rnaseqDTU

updated 5.3 years ago by Michael Love 43k • written 5.3 years ago by nicog • 0

vote

replies

1.7k

views

rnaseqdtu

5.5 years ago rbenel ▴ 40

vote

1.6k

views

DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.7 years ago by Michael Love 43k • written 5.9 years ago by fiona.dick91 ▴ 60

votes

replies

1.8k

views

rnaseqDTU DRIMseq DEXseq rna-seq

5.7 years ago saddamhusain77 • 0

votes

replies

3.7k

views

tximport dtu salmon TPM rnaseqDTU

written 5.7 years ago by fiona.dick91 ▴ 60

votes

replies

1.9k

views

stageR rnaseqDTU DRIMSeq DEXSeq

5.9 years ago d-joester ▴ 20

votes

replies

1.5k

views

rnaseqdtu

5.9 years ago rbenel ▴ 40

votes

replies

2.6k

views

rnaseqDTU dtu

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by rbenel ▴ 40

votes

replies

1.3k

views

DTU DRIMSeq rnaseqDTU

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by fiona.dick91 ▴ 60

votes

replies

1.3k

views

drimseq rnaseqdtu stager

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by Jack.Hearn • 0

vote

replies

1.8k

views

DEXSeq StageR rnaseqDTU

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by rbenel ▴ 40

18 results • Page 1 of 1

Recent ...

Replies

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by anna.cot.anna.cot ▴ 30

Thank you! This is actually quite close to my real dataset. I simplified the names to make it easier as an example, but I have now correcte…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Hi Xiaofei, Is it possible to generate a matrix of beta values or M-values with rownames as probe IDs from this data? If so, cpg.annotate(…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

That looks basically correct, although the terms that you are inputing to `makeContrasts` do not match the condition names in the targets f…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by James W. MacDonald 67k

Oh, right. There's two ways to enter code. If you are in the middle of a sentence and you want to include a function name, you wrap the nam…

Votes

Answer: nightmare to make custom txdb for genomes from ToxoDB

Comment: nightmare to make custom txdb for genomes from ToxoDB

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw

Answer: nightmare to make custom txdb for genomes from ToxoDB

A: Advice on correcting for batch effect using DESeq2

Awards • All

Popular Question to Jenny Drnevich ★ 2.0k

Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k