Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
rnaseqr
•
reset
6
votes
11
replies
4.1k
views
How to properly average normalized counts of biological replicates
DESeq2
Normalization
RNASeqR
updated 10 weeks ago by
Priya
• 0 • written 3.2 years ago by
Marina
▴ 40
0
votes
2
replies
2.3k
views
Incorporating spike-ins to rna-seq analysis
Spike-in
RNASeqR
DESeq2
Normalization
rna-seq
updated 8 months ago by
manuel.fernandez
• 0 • written 2.1 years ago by
cicely.day
• 0
0
votes
1
reply
999
views
Batch effects in DESeq2: determination and model building
BatchEffect
batch
RNASeqR
formula
DESeq2
updated 21 months ago by
Michael Love
42k • written 21 months ago by
estafana.t98
• 0
0
votes
3
replies
1.3k
views
using of z score in Differentially Expression Analysis
RNASeqR
updated 21 months ago by
ATpoint
★ 4.1k • written 21 months ago by
fatemehfakhari74
• 0
1
vote
1
reply
795
views
edgeR for SDE analysis
RNASeqRData
edgeR
RNASeqR
RNASeqData
updated 2.2 years ago by
Gordon Smyth
50k • written 2.2 years ago by
vikycairoli
• 0
1
vote
3
replies
1.2k
views
Error with hclust
RNASeqR
#hclust
#wgcna
#dissimilarity
#average
updated 2.5 years ago by
ATpoint
★ 4.1k • written 2.5 years ago by
devbhavin20
• 0
4
votes
1
reply
2.0k
views
mitochondrial RNA percentage in bulk RNAseq data
rnaseqGene
RNASeqR
DESeq2
RNAseq
updated 2.6 years ago by
Michael Love
42k • written 2.6 years ago by
sohail.mbio
▴ 10
0
votes
1
reply
851
views
Question about normalizing and removing batch effects from bulk RNA-seq data from NCBI-SRA
Arabidopsis_thaliana_Data
RNASeqR
Normalization
BatchEffect
updated 2.6 years ago by
James W. MacDonald
66k • written 2.6 years ago by
bhandary.8590
▴ 20
0
votes
1
reply
929
views
Outliers on DESEq2 Results
RNASeqR
DifferentialExpression
DESeq2
updated 2.7 years ago by
Michael Love
42k • written 2.7 years ago by
Bruno Rodrigo
• 0
1
vote
10
replies
3.0k
views
Duplicate correlation with limma in before-after exposure experiment
RNASeqR
3.4 years ago • updated 3.0 years ago
sofie.haglund
• 0
2
votes
2
replies
1.5k
views
Need help in determing upregulated and downregulated genes
RNASeqR
3.1 years ago
Rishav
▴ 20
1
vote
3
replies
1.8k
views
Mapping EntrezId to Ensembl IDs returns NA for pseudogenes and snoRNA
RNASeqData
RNASeq
RNASeqR
3.1 years ago
dantasezequiel1
• 0
3
votes
4
replies
1.4k
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
3.1 years ago
hgalmoore
• 0
0
votes
1
reply
887
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData
limma
RNASeq
RNASeqR
updated 3.1 years ago by
Gordon Smyth
50k • written 3.1 years ago by
Rita
• 0
1
vote
5
replies
1.6k
views
while designing matrix i got an error, please help me out
RNASeqR
updated 3.1 years ago by
Basti
▴ 780 • written 3.1 years ago by
Rishav
▴ 20
1
vote
2
replies
844
views
Bioconductor packages for doing tRNA seq analysis
RNASeqR
updated 3.2 years ago by
Gordon Smyth
50k • written 3.2 years ago by
Rishav
▴ 20
1
vote
3
replies
912
views
Need help in doing network analysis using R
RNASeqR
updated 3.2 years ago by
ATpoint
★ 4.1k • written 3.2 years ago by
Rishav
▴ 20
1
vote
2
replies
845
views
Error occured in designing a matrix
RNASeqR
updated 3.2 years ago by
Gordon Smyth
50k • written 3.2 years ago by
Rishav
▴ 20
1
vote
5
replies
886
views
Error when calculating DE using the classical approach in edgeR
RNASeqR
3.2 years ago
Rishav
▴ 20
1
vote
2
replies
1.5k
views
I am creating contrast matrix and i am following every procedure but still i don't understand where i am getting error
RNASeqR
3.2 years ago
Rishav
▴ 20
0
votes
1
reply
2.3k
views
Biological replicates in DESeq2
DESeq2
Bioconductor
RNASeqR
updated 3.2 years ago by
ATpoint
★ 4.1k • written 3.2 years ago by
Blanca
• 0
0
votes
1
reply
1.0k
views
Using tximport to create the input for DESeq2
RNASeqR
updated 3.2 years ago by
Michael Love
42k • written 3.2 years ago by
ahmesalama
• 0
5
votes
5
replies
2.5k
views
analyzing RNA-Seq transcriptomic data (GEO accession: GSE96058)
GEO
RNASeqR
Transcriptomics
updated 3.2 years ago by
James W. MacDonald
66k • written 3.2 years ago by
H. Z. Amini
▴ 10
0
votes
2
replies
5.4k
views
TPM data in limma/voom
voom
limma
DifferentialExpression
edgeR
3.2 years ago
RJM
• 0
0
votes
1
reply
755
views
Find significant genes related to a specific disease
GeneExpression
RNASeqR
limma
updated 3.5 years ago by
António Miguel de Jesus Domingues
▴ 510 • written 3.5 years ago by
Will
• 0
7
votes
6
replies
3.5k
views
WHat is the difference between DEG and TopVarGenes in DESEq2?
DESeq2
R
RNASeqR
3.5 years ago
ecg1g15
▴ 20
3
votes
5
replies
2.1k
views
Volcano plot - select additional gene
EnhancedVolcano
RNASeqR
R
volcanoplot
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
camillab.
▴ 10
27 results • Page
1 of 1
Recent ...
Replies
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
mohammedtoufiq91
▴ 10
https://support.bioconductor.org/u/5106/ thank you very much.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Thank you so much!
Answer: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Votes
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Awards
• All
Scholar
to
Mike Smith
★ 6.5k
Popular Question
to
mohammedtoufiq91
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
bas_work
▴ 30
Popular Question
to
landenshanie
▴ 40
Locations
• All
China,
2 minutes ago
United States,
7 minutes ago
Japan,
11 minutes ago
India,
30 minutes ago
United States,
31 minutes ago
Traffic: 520 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6