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s4
•
reset
2
votes
7
replies
2.7k
views
Removing samples from S4 object (in lumi)
lumi
S4
9.2 years ago
Chi Hong
• 0
1
vote
2
replies
733
views
Remove any rows with 0 count in S4
S4
deseq2
updated 5.3 years ago by
swbarnes2
★ 1.4k • written 5.3 years ago by
shintzen
• 0
0
votes
1
reply
1.8k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads
error
as.vector(data)
s4vectors
s4
8.7 years ago
schasse
• 0
15
votes
4
replies
11k
views
How to convert a GRangesList object into a GRanges object?
genomicranges
grangeslist
granges
s4
updated 2.1 years ago by
Hervé Pagès
16k • written 7.9 years ago by
richierocks
▴ 40
2
votes
2
replies
1.2k
views
How to coerce CompressedIntegerList as vector?
s4
coercion
iranges
integerlist
7.8 years ago
jian_liangli
• 0
2
votes
2
replies
1.1k
views
How to detect and replace zero index in IntegerList ?
iranges
integerlist
s4
7.8 years ago
Jurat Shahidin
▴ 80
2
votes
1
reply
1.0k
views
Large Size of R packages containing S4 classes
S4
packages
updated 5.7 years ago by
Michael Lawrence
★ 11k • written 5.7 years ago by
lukaszbednarz
▴ 10
2
votes
2
replies
1.1k
views
SetMethod to dispatch on class in unattached package
s4
methods
SummarizedExperiment
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
brendan.innes
▴ 20
0
votes
2
replies
1.0k
views
Automatically disconnecting database connections stored within an S4 object
DBI
S4
Biobase
updated 21 months ago by
Hervé Pagès
16k • written 21 months ago by
sandmann.t
▴ 70
7
votes
7
replies
5.2k
views
convert S4 DataFrame of Rle objects to sparse matrix
s4
updated 9.1 years ago by
Michael Lawrence
★ 11k • written 9.1 years ago by
Koen Van den Berge
▴ 180
2
votes
4
replies
802
views
Does my package fit into bioconductor (and further advice)?
calcium imaging
imaging
s4
updated 4.1 years ago by
shepherl
3.9k • written 4.1 years ago by
muad.abdelhay
▴ 10
0
votes
1
reply
861
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 3.9 years ago by
Aaron Lun
★ 28k • written 3.9 years ago by
lklei001
• 0
3
votes
2
replies
999
views
Proper way to deprecate an S4 generic
s4
generic
updated 5.3 years ago by
Marcel Ramos
700 • written 5.3 years ago by
Michael Steinbaugh
▴ 90
2
votes
2
replies
1.0k
views
DataFrame compatible left_join (merge) operation supporting S4 complex columns that never reorders rows
s4
dataframe
left_join
merge
updated 5.1 years ago by
Hervé Pagès
16k • written 5.1 years ago by
Michael Steinbaugh
▴ 90
2
votes
2
replies
663
views
Test wether bioconductor class is linear or rectangular in base R
class
S4
updated 4.2 years ago by
Hervé Pagès
16k • written 4.2 years ago by
Teun van den Brand
• 0
0
votes
3
replies
1.1k
views
How to clear a cached S4 method
devtools
S4
methods
cache
5.5 years ago
Michael Steinbaugh
▴ 90
0
votes
0
replies
1.3k
views
no method for coercing this S4 class to a vector
mclust
s4vectors
S4
as.matrix
.FCS
7.9 years ago
anara92
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters
by
anne-laure
• 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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Koen Van den Berge
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shepherl
3.9k
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Ken C
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Johannes Rainer
★ 2.0k
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