Bioconductor SimplesingleCell

Showing : simplesingleCell • reset

votes

replies

2.8k

views

DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 5.0 years ago by Aaron Lun ★ 29k • written 6.2 years ago by C T ▴ 140

votes

replies

1.8k

views

simpleSingleCell

updated 6.2 years ago by Aaron Lun ★ 29k • written 6.2 years ago by Angelos Armen • 0

vote

999

views

simpleSingleCell

updated 6.2 years ago by Aaron Lun ★ 29k • written 6.2 years ago by Angelos Armen • 0

votes

5.5k

views

DropletUtils EmptyDrops simpleSingleCell

updated 3.2 years ago by Stefano Mangiola ▴ 40 • written 6.2 years ago by shbrief ▴ 20

vote

replies

2.3k

views

scran simpleSingleCell

updated 6.3 years ago by Aaron Lun ★ 29k • written 6.3 years ago by Angelos Armen • 0

votes

replies

3.6k

views

limma edgeR simplesingleCell scran scater

updated 6.3 years ago by Aaron Lun ★ 29k • written 6.3 years ago by Bogdan ▴ 670

votes

replies

2.3k

views

SingleCellExperiment scran limma simpleSingleCell

updated 6.4 years ago by Aaron Lun ★ 29k • written 6.4 years ago by Matt Mulé • 0

vote

replies

2.2k

views

DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 6.4 years ago by Aaron Lun ★ 29k • written 6.4 years ago by Steve Pederson ▴ 170

votes

replies

3.6k

views

singlecellexperiment dropletutils simplesinglecell

updated 7.0 years ago by Aaron Lun ★ 29k • written 7.0 years ago by Peter Hickey ▴ 760

votes

1.3k

views

workflows simplesinglecell

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by es.azadian • 0

votes

1.3k

views

simplesinglecell

updated 7.6 years ago by Aaron Lun ★ 29k • written 7.6 years ago by Xingyu • 0

vote

replies

2.3k

views

scater singlecellexperiment simplesinglecell

updated 7.7 years ago by Aaron Lun ★ 29k • written 7.7 years ago by Xingyu • 0

votes

replies

4.1k

views

scater simpleSingleCell workflows

updated 8.4 years ago by Aaron Lun ★ 29k • written 8.4 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

Recent ...

Replies

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

Awards • All