Bioconductor SimplesingleCell

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 5.3 years ago by Aaron Lun ★ 29k • written 6.5 years ago by C T ▴ 140

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simpleSingleCell

updated 6.5 years ago by Aaron Lun ★ 29k • written 6.5 years ago by Angelos Armen • 0

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1.1k

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simpleSingleCell

updated 6.5 years ago by Aaron Lun ★ 29k • written 6.5 years ago by Angelos Armen • 0

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DropletUtils EmptyDrops simpleSingleCell

updated 3.5 years ago by Stefano Mangiola ▴ 40 • written 6.5 years ago by shbrief ▴ 20

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2.6k

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scran simpleSingleCell

updated 6.5 years ago by Aaron Lun ★ 29k • written 6.5 years ago by Angelos Armen • 0

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3.8k

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limma edgeR simplesingleCell scran scater

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by Bogdan ▴ 670

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2.5k

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SingleCellExperiment scran limma simpleSingleCell

updated 6.7 years ago by Aaron Lun ★ 29k • written 6.7 years ago by Matt Mulé • 0

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2.3k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 6.7 years ago by Aaron Lun ★ 29k • written 6.7 years ago by Steve Pederson ▴ 170

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4.0k

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singlecellexperiment dropletutils simplesinglecell

updated 7.3 years ago by Aaron Lun ★ 29k • written 7.3 years ago by Peter Hickey ▴ 760

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1.3k

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workflows simplesinglecell

updated 7.4 years ago by Aaron Lun ★ 29k • written 7.4 years ago by es.azadian • 0

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1.4k

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simplesinglecell

updated 7.9 years ago by Aaron Lun ★ 29k • written 7.9 years ago by Xingyu • 0

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2.4k

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scater singlecellexperiment simplesinglecell

updated 8.0 years ago by Aaron Lun ★ 29k • written 8.0 years ago by Xingyu • 0

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4.4k

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scater simpleSingleCell workflows

updated 8.6 years ago by Aaron Lun ★ 29k • written 8.6 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

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Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you so much for your help! will try to proceed with the suggestion

Comment: GSEA in R/Bioconductor course by a2a2haa • 0

Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…

Answer: Bulk RNAseq analysis for by Gordon Smyth 53k

All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…

Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo by a2a2haa • 0

By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…

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Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

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