Bioconductor SimplesingleCell

Showing : simplesingleCell • reset

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5.7k

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DropletUtils EmptyDrops simpleSingleCell

updated 3.6 years ago by Stefano Mangiola ▴ 40 • written 6.6 years ago by shbrief ▴ 20

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4.5k

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scater simpleSingleCell workflows

updated 8.7 years ago by Aaron Lun ★ 29k • written 8.7 years ago by sandmann.t ▴ 70

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4.1k

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singlecellexperiment dropletutils simplesinglecell

updated 7.4 years ago by Aaron Lun ★ 29k • written 7.4 years ago by Peter Hickey ▴ 760

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3.9k

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limma edgeR simplesingleCell scran scater

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by Bogdan ▴ 670

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3.3k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 5.4 years ago by Aaron Lun ★ 29k • written 6.5 years ago by C T ▴ 140

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2.6k

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scran simpleSingleCell

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by Angelos Armen • 0

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2.6k

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SingleCellExperiment scran limma simpleSingleCell

updated 6.8 years ago by Aaron Lun ★ 29k • written 6.8 years ago by Matt Mulé • 0

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2.4k

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scater singlecellexperiment simplesinglecell

updated 8.1 years ago by Aaron Lun ★ 29k • written 8.1 years ago by Xingyu • 0

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2.3k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 6.8 years ago by Aaron Lun ★ 29k • written 6.8 years ago by Steve Pederson ▴ 170

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2.0k

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simpleSingleCell

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by Angelos Armen • 0

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1.4k

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simplesinglecell

updated 8.0 years ago by Aaron Lun ★ 29k • written 8.0 years ago by Xingyu • 0

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1.3k

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workflows simplesinglecell

updated 7.5 years ago by Aaron Lun ★ 29k • written 7.5 years ago by es.azadian • 0

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1.1k

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simpleSingleCell

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by Angelos Armen • 0

13 results • Page 1 of 1

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Comment: Subsetting DDS object for individual conditions over time by A ▴ 60

Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…

Answer: Subsetting DDS object for individual conditions over time by ATpoint ★ 5.0k

It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…

Comment: GSEA error by Adithi • 0

Thank you so much. That makes perfect sense to me. I will work on this.

Comment: tximeta cannot open annotation gtf? by Michael Love 43k

Yes, so this is the same type of error you would get if you tried to assemble a *SummarizedExperiment* manually with tximport + GTF process…

Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k

> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…

Votes

Answer: DESeq2 LRT Reduced Formula

Answer: DESeq2: LRT or WALD guidance

Answer: GSEA error

Answer: OrgDb for maize

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

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