Bioconductor SimplesingleCell

Showing : simplesingleCell • reset

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1.6k

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SingleCellExperiment scran limma simpleSingleCell

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by Matt Mulé • 0

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3.2k

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scater simpleSingleCell workflows

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by sandmann.t ▴ 70

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scater singlecellexperiment simplesinglecell

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Xingyu • 0

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955

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simplesinglecell

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Xingyu • 0

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856

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workflows simplesinglecell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by es.azadian • 0

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singlecellexperiment dropletutils simplesinglecell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Peter Hickey ▴ 740

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1.7k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by Steve Pederson ▴ 170

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2.8k

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limma edgeR simplesingleCell scran scater

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Bogdan ▴ 670

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1.6k

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scran simpleSingleCell

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Angelos Armen • 0

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DropletUtils EmptyDrops simpleSingleCell

updated 21 months ago by Stefano Mangiola ▴ 10 • written 4.8 years ago by shbrief ▴ 20

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678

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simpleSingleCell

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by Angelos Armen • 0

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simpleSingleCell

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by Angelos Armen • 0

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 3.6 years ago by Aaron Lun ★ 28k • written 4.7 years ago by C T ▴ 140

13 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

To me, 100 and 200 kb both look fine. You want to have blocks smaller than segmentation regions.

Comment: ChAMP installation issue by e1271094 • 0

I discovered that the dataset data("probe.features.epicv1") is unavailable. Instead, the dataset data("probe.features.epic") is accessible.…

Comment: ChAMP installation issue by e1271094 • 0

I apologise for any inconvenience. I have successfully installed the ChAMP package. However, I am now encountering a new error: myLoad <- …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Yes, blockLength=200000, and seg=seg. I am concerned about the inter-feature distance of features. I generated this plot for various bloc…

Answer: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k

Can you use `vst` instead of `rlog` and increase to 1000 or 2000 genes? I'm wondering if there's a way to characterize these 7 samples. …

Votes

Ensembl 112 has been released.

A: Diffbind results - non uniform width

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Answer: Error EPICv2 ChAMP

Comment: Store output of matchPWM()

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Scholar to mat149 ▴ 70