Bioconductor SimplesingleCell

Showing : simplesingleCell • reset

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simpleSingleCell

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by Angelos Armen • 0

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2.0k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 3.6 years ago by Aaron Lun ★ 28k • written 4.7 years ago by C T ▴ 140

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scran simpleSingleCell

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Angelos Armen • 0

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limma edgeR simplesingleCell scran scater

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Bogdan ▴ 670

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1.7k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by Steve Pederson ▴ 170

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2.4k

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singlecellexperiment dropletutils simplesinglecell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Peter Hickey ▴ 740

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1.6k

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SingleCellExperiment scran limma simpleSingleCell

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by Matt Mulé • 0

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1.8k

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scater singlecellexperiment simplesinglecell

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Xingyu • 0

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3.1k

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scater simpleSingleCell workflows

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by sandmann.t ▴ 70

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4.5k

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DropletUtils EmptyDrops simpleSingleCell

updated 21 months ago by Stefano Mangiola ▴ 10 • written 4.8 years ago by shbrief ▴ 20

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677

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simpleSingleCell

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by Angelos Armen • 0

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855

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workflows simplesinglecell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by es.azadian • 0

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954

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simplesinglecell

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Xingyu • 0

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Comment: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by alex.pico ▴ 20

Hi Matthew. Happy to help. The error message you are getting is indeed not very helpful. It's just saying that the CyREST return obj "res" …

Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]' by bandconductor • 0

thanks! you have saved me so much time

Comment: Problem finding certain variables when importing a public database GSE73103 by Guido Hooiveld ★ 3.9k

FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…

Votes

Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'

ChipQC 'names' attribute [9] must be the same length as the vector [2]'

A: DEXSeq time course design

using variable in design formula

differential expression for Single-cell RNAseq data using edgeR

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