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splicing
•
reset
1
vote
6
replies
2.1k
views
SGSeq error on analyzeFeatures
SGSeq
analyzeFeatures
Splicing
9.4 years ago • updated 9.3 years ago
Paolo Guarnieri
▴ 20
1
vote
3
replies
1.7k
views
Microarray data analysis for detecting alternative splicing
microarray
splicing
updated 8.3 years ago by
Sonika Tyagi
▴ 20 • written 9.5 years ago by
gv
▴ 40
1
vote
2
replies
1.5k
views
Coverage function assigns wrong weights for gapped alignments
genomicalignments
splicing
coverage
updated 4.5 years ago by
Michael Lawrence
★ 11k • written 7.1 years ago by
rasi1983
▴ 10
2
votes
2
replies
1.7k
views
Deseq2 alternative splicing in understudied organism
deseq2
splicing
updated 6.0 years ago by
Michael Love
41k • written 6.0 years ago by
yannickwurm
• 0
0
votes
1
reply
1.1k
views
About CIRI's output
ciri
splicing
splicesites
updated 4.2 years ago by
lhddiallo
• 0 • written 5.9 years ago by
csijst
• 0
0
votes
1
reply
885
views
Can DEXseq be used for splicing QTL analysis?
dexseq
splicing
sqtl
qtl
updated 5.2 years ago by
Alejandro Reyes
★ 1.9k • written 5.3 years ago by
rtunney2
• 0
0
votes
1
reply
493
views
Transcriptome assembly: single individual or pooled samples
transcriptome
splicing
assembly
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
Marianna
▴ 20
3
votes
16
replies
2.6k
views
Read counts generated by SGSeq are always 0
sgseq
splicing
alternative splicing
updated 8.2 years ago by
Leonard Goldstein
▴ 180 • written 8.2 years ago by
vakul.mohanty
▴ 10
1
vote
2
replies
1.5k
views
Is it possible to get Isoform-level differential isoform usage form DRIMSeq?
DRIMSeq
splicing
differential isoform usage
updated 7.2 years ago by
Gosia Nowicka
▴ 90 • written 7.3 years ago by
kristoffer.vittingseerup
▴ 20
2
votes
7
replies
2.2k
views
EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
edger
normalization
differential exon usage
splicing
updated 3.5 years ago by
Yunshun Chen
▴ 840 • written 3.5 years ago by
oakhamwolf
• 0
0
votes
1
reply
219
views
Using splicing junction counts with edgeR/limma-voom
splicing
limma
edgeR
updated 5 weeks ago by
Gordon Smyth
50k • written 5 weeks ago by
scoops_streams_06
• 0
0
votes
0
replies
1.5k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
8.5 years ago
Fiona
▴ 70
0
votes
0
replies
682
views
Psichomics Suppa Input issue
psichomics
SUPPA
Splicing
Alternative Splicing
Retained Introns
3.5 years ago
noahhelton98
▴ 20
0
votes
1
reply
827
views
DEXSeq Exon count not working, please help with an alternative like featureCounts
splicing
Exon
featureCounts
subread
DEXSeq
23 months ago
NIK
• 0
0
votes
1
reply
820
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
4.4 years ago
stuart
▴ 10
0
votes
3
replies
1.1k
views
DEXSeq Splicing Result with incomplete lines between exons
DEXSeq
Splicing
Exon Usage
4.2 years ago
gunjan.dikshit
• 0
16 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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