Showing : statisticalmethod • reset
3
votes
4
replies
659
views
p-adjusted values in multiple comparisons
StatisticalMethod limma RnaSeqSampleSizeData
updated 4 months ago by • 0 • written 5 months ago by • 0
0
votes
0
replies
277
views
Correlation threshold
MethylationArray methylationArrayAnalysis StatisticalMethod
10 months ago user_bioinfo • 0
1
vote
2
replies
525
views
Detecting genomic signatures of drug resistance breast cancer in transcriptomic data
TransOmicsData signatureSearchData StatisticalMethod
written 14 months ago by • 0
0
votes
1
reply
782
views
Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 20 months ago by ★ 1.4k • written 20 months ago by • 0
0
votes
0
replies
697
views
Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
21 months ago pierre.devillemereuil • 0
0
votes
3
replies
1.8k
views
Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 21 months ago by ★ 5.0k • written 21 months ago by • 0
2
votes
2
replies
4.5k
views
DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
2.1 years ago Linton • 0
1
vote
2
replies
1.4k
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
2.1 years ago Sabiha ▴ 20
2
votes
2
replies
1.2k
views
DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
2.2 years ago Manthos • 0
6
votes
2
replies
2.4k
views
DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 2.3 years ago by 53k • written 2.3 years ago by ▴ 10
3
votes
2
replies
1.3k
views
Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 2.6 years ago by 53k • written 2.6 years ago by ▴ 30
2
votes
3
replies
4.0k
views
deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 2.9 years ago by ★ 5.0k • written 2.9 years ago by ▴ 10
2
votes
4
replies
1.3k
views
Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
3.0 years ago Loïc • 0
0
votes
2
replies
1.5k
views
Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
3.0 years ago rcreswell01 • 0
1
vote
3
replies
1.9k
views
Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 3.0 years ago by 53k • written 3.0 years ago by ▴ 10
0
votes
1
reply
879
views
DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 3.2 years ago by 43k • written 3.3 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
3.3 years ago Laurent Gatto 1.6k
1
vote
2
replies
1.9k
views
Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
3.4 years ago walkerrh95 • 0
0
votes
0
replies
1.5k
views
Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
3.4 years ago gaow • 0
0
votes
0
replies
872
views
Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
3.9 years ago dong ▴ 10
2
votes
3
replies
6.8k
views
Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 3.8 years ago by • 0 • written 4.0 years ago by • 0
6
votes
4
replies
1.6k
views
Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
4.1 years ago Giovanni • 0
2
votes
7
replies
2.3k
views
EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
4.4 years ago Field -Ye • 0
0
votes
2
replies
2.3k
views
To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
4.6 years ago Aneesha • 0
0
votes
1
reply
1.2k
views
DESeq2 Design matrix
StatisticalMethod DESeq2
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
6
votes
6
replies
2.7k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 4.9 years ago by 53k • written 4.9 years ago by ▴ 10
1
vote
3
replies
1.8k
views
How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 5.0 years ago by 43k • written 5.0 years ago by • 0
0
votes
0
replies
2.0k
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
5.1 years ago jol.espinoz ▴ 40
0
votes
2
replies
1.1k
views
p adjusted value not available
StatisticalMethod DESeq2
updated 5.2 years ago by ★ 4.0k • written 5.2 years ago by • 0
29 results • Page 1 of 1
Recent ...
Replies
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: GSEA in R/Bioconductor course by a2a2haa • 0
Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for by Gordon Smyth 53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo by a2a2haa • 0
By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
Awards • All
Popular Question to shepherl 4.3k
Popular Question to Andreas Zankl ▴ 80
Popular Question to Guido Hooiveld ★ 4.1k
Popular Question to Steve Lianoglou ★ 13k
Teacher to Michael Love 43k
Locations • All
Melbourne, Australia, 7 minutes ago
WEHI, Melbourne, Australia, 10 minutes ago
United States, 1 hour ago
United States, 1 hour ago
The city by the bay, 3 hours ago
Traffic: 1408 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6