Bioconductor SystemPipeR

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3.7k

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systempiper

5.4 years ago Deleted ▴ 70

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977

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systemPipeRdata systempipeR

2.1 years ago appropiate • 0

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2.1k

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R rnaseq tophat summarizeoverlaps systempiper

updated 7.5 years ago by Thomas Girke ★ 1.7k • written 7.5 years ago by abass.conteh • 0

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3.0k

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systemPipeR Bioconductor DiffBind BiocGenerics

updated 3.3 years ago by Martin Morgan 25k • written 3.3 years ago by tina • 0

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systempiper run_edgeR

updated 7.6 years ago by Thomas Girke ★ 1.7k • written 7.6 years ago by alexandr.gopanenko ▴ 50

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R edger systemPipeR

7.2 years ago xuertowong • 0

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1.1k

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systempiper R batchjobs

updated 6.6 years ago by Thomas Girke ★ 1.7k • written 6.6 years ago by tarun2 • 0

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1.7k

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systempiper edger rna-seq

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by clarisbaby • 0

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673

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systempiper

5.7 years ago kimberly.dickson • 0

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1.2k

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systemPipeR rnaseq

5.7 years ago rj.innet • 0

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runCommandline systemPipeR bash

5.6 years ago rj.innet • 0

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1.6k

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systempiper seeFastqPlot software error ggplot2 geom_histogram

updated 8.3 years ago by Thomas Girke ★ 1.7k • written 8.3 years ago by setarosd • 0

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682

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predORF systemPipeR ORF prediction

5.0 years ago Mr.RB ▴ 20

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1.5k

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deseq2 systemPipeR

9.5 years ago Ugo Borello ▴ 340

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762

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systemPipeR

updated 2.4 years ago by dcassol ▴ 100 • written 2.4 years ago by Bioinformatics ▴ 30

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503

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systemPipeRdata systemPipeR

2.2 years ago appropiate • 0

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3.7k

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deseq2 systempiper Tutorial

7.8 years ago musa ▴ 10

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1.4k

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systempiper go term

7.9 years ago A Gossner ▴ 50

18 results • Page 1 of 1

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Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0

I tried also with oligo does not work, any other suggestion?

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Answer: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

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A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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Popular Question to rohitsatyam102 ▴ 20