Bioconductor Systempiper

Showing : systempiper • reset

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967

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systemPipeRdata systempipeR

2.1 years ago appropiate • 0

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500

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systemPipeRdata systemPipeR

2.1 years ago appropiate • 0

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749

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systemPipeR

updated 2.3 years ago by dcassol ▴ 100 • written 2.3 years ago by Bioinformatics ▴ 30

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2.9k

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systemPipeR Bioconductor DiffBind BiocGenerics

updated 3.2 years ago by Martin Morgan 25k • written 3.2 years ago by tina • 0

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673

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predORF systemPipeR ORF prediction

5.0 years ago Mr.RB ▴ 20

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3.7k

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systempiper

5.4 years ago Deleted ▴ 70

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1.2k

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runCommandline systemPipeR bash

5.6 years ago rj.innet • 0

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1.2k

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systemPipeR rnaseq

5.6 years ago rj.innet • 0

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668

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systempiper

5.7 years ago kimberly.dickson • 0

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1.7k

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systempiper edger rna-seq

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by clarisbaby • 0

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1.1k

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systempiper R batchjobs

updated 6.6 years ago by Thomas Girke ★ 1.7k • written 6.6 years ago by tarun2 • 0

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1.2k

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R edger systemPipeR

7.1 years ago xuertowong • 0

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2.1k

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R rnaseq tophat summarizeoverlaps systempiper

updated 7.5 years ago by Thomas Girke ★ 1.7k • written 7.5 years ago by abass.conteh • 0

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2.0k

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systempiper run_edgeR

updated 7.5 years ago by Thomas Girke ★ 1.7k • written 7.5 years ago by alexandr.gopanenko ▴ 50

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3.7k

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deseq2 systempiper Tutorial

7.8 years ago musa ▴ 10

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1.4k

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systempiper go term

7.9 years ago A Gossner ▴ 50

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1.6k

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systempiper seeFastqPlot software error ggplot2 geom_histogram

updated 8.2 years ago by Thomas Girke ★ 1.7k • written 8.2 years ago by setarosd • 0

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1.5k

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deseq2 systemPipeR

9.5 years ago Ugo Borello ▴ 340

18 results • Page 1 of 1

Recent ...

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Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…

Comment: DESeq2 output used for PCA plot on R studio by ATpoint ★ 4.0k

> Increase variability for mutants: use larger subtractive modifiers I was thinking the same as swbarnes. You're doing some data munging h…

Votes

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Awards • All

Scholar to ATpoint ★ 4.0k