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systempiper
•
reset
3
votes
2
replies
1.6k
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
3.7 years ago
appropiate
• 0
0
votes
0
replies
820
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
3.7 years ago
appropiate
• 0
0
votes
1
reply
1.3k
views
how to analysis chip-seq data
systemPipeR
updated 3.9 years ago by
dcassol
▴ 100 • written 3.9 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
4.1k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
tina
• 0
0
votes
0
replies
1.0k
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
6.6 years ago
Mr.RB
▴ 20
14
votes
10
replies
4.8k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
7.0 years ago
Deleted
▴ 70
0
votes
2
replies
1.6k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
7.1 years ago
rj.innet
• 0
0
votes
2
replies
1.6k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
7.2 years ago
rj.innet
• 0
0
votes
2
replies
1.0k
views
systemARGS not found
systempiper
7.3 years ago
kimberly.dickson
• 0
0
votes
3
replies
2.3k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 7.6 years ago by
Aaron Lun
★ 29k • written 7.6 years ago by
clarisbaby
• 0
0
votes
1
reply
1.6k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 8.1 years ago by
Thomas Girke
★ 1.7k • written 8.1 years ago by
tarun2
• 0
0
votes
2
replies
1.6k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
8.7 years ago
xuertowong
• 0
2
votes
3
replies
2.7k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 9.0 years ago by
Thomas Girke
★ 1.7k • written 9.0 years ago by
abass.conteh
• 0
1
vote
2
replies
2.4k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 9.1 years ago by
Thomas Girke
★ 1.7k • written 9.1 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
4.7k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
9.4 years ago
musa
▴ 10
0
votes
4
replies
1.9k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
9.4 years ago
A Gossner
▴ 50
0
votes
2
replies
2.1k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 9.8 years ago by
Thomas Girke
★ 1.7k • written 9.8 years ago by
setarosd
• 0
0
votes
4
replies
2.0k
views
systemPipeR with DESeq2
deseq2
systemPipeR
11.1 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
by
James W. MacDonald
68k
Note that `S4Vectors` contains source code, so you will also need to [install RTools first][1]. [1]: https://cran.r-project.org/bin/win…
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
by
shepherl
4.2k
Our windows binaries are currently lagging behind as we are currently do not have a windows builder. If you are on windows you can try ins…
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
by
shepherl
4.2k
Can you please provide your `sessionInfo()` after doing `library("S4Vectors")`
Comment: VariantAnnotation does escape = within header string quotes
by
Daniel Cameron
▴ 40
I'm just stripping the entire line as a workaround using `meta(header(vcf))$DRAGENCommandLine = NULL`. Not ideal but at least subsequent pa…
Comment: Setting up a DESeq2 Design with Paired Data
by
Alexander
• 0
Hi Kevin, Firstly, thank you so much for not only a very prompt response, but one that is incredibly insightful and helps me learn DESeq2 …
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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shepherl
4.2k
Scholar
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James W. MacDonald
68k
Popular Question
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Daniel Cameron
▴ 40
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Peter Hickey
▴ 760
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edward.esiribloom
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