Bioconductor Systempiper

Showing : systempiper • reset

votes

replies

980

views

systemPipeRdata systempipeR

2.2 years ago appropiate • 0

votes

replies

504

views

systemPipeRdata systemPipeR

2.2 years ago appropiate • 0

votes

765

views

systemPipeR

updated 2.4 years ago by dcassol ▴ 100 • written 2.4 years ago by Bioinformatics ▴ 30

votes

replies

3.0k

views

systemPipeR Bioconductor DiffBind BiocGenerics

updated 3.3 years ago by Martin Morgan 25k • written 3.3 years ago by tina • 0

votes

replies

684

views

predORF systemPipeR ORF prediction

5.1 years ago Mr.RB ▴ 20

votes

replies

3.7k

views

systempiper

5.4 years ago Deleted ▴ 70

votes

replies

1.2k

views

runCommandline systemPipeR bash

5.6 years ago rj.innet • 0

votes

replies

1.2k

views

systemPipeR rnaseq

5.7 years ago rj.innet • 0

votes

replies

675

views

systempiper

5.7 years ago kimberly.dickson • 0

votes

replies

1.7k

views

systempiper edger rna-seq

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by clarisbaby • 0

votes

1.1k

views

systempiper R batchjobs

updated 6.6 years ago by Thomas Girke ★ 1.7k • written 6.6 years ago by tarun2 • 0

votes

replies

1.2k

views

R edger systemPipeR

7.2 years ago xuertowong • 0

votes

replies

2.1k

views

R rnaseq tophat summarizeoverlaps systempiper

updated 7.5 years ago by Thomas Girke ★ 1.7k • written 7.5 years ago by abass.conteh • 0

vote

replies

2.0k

views

systempiper run_edgeR

updated 7.6 years ago by Thomas Girke ★ 1.7k • written 7.6 years ago by alexandr.gopanenko ▴ 50

votes

replies

3.7k

views

deseq2 systempiper Tutorial

7.9 years ago musa ▴ 10

votes

replies

1.4k

views

systempiper go term

7.9 years ago A Gossner ▴ 50

votes

replies

1.6k

views

systempiper seeFastqPlot software error ggplot2 geom_histogram

updated 8.3 years ago by Thomas Girke ★ 1.7k • written 8.3 years ago by setarosd • 0

votes

replies

1.5k

views

deseq2 systemPipeR

9.5 years ago Ugo Borello ▴ 340

18 results • Page 1 of 1

Recent ...

Replies

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Awards • All

Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k