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time series
•
reset
1
vote
8
replies
2.1k
views
time series, block by patient, between and within comparisons limma-voom
rna-seq
time series
patient
limma-voom
updated 6.2 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
aec
▴ 90
4
votes
7
replies
3.7k
views
LIMMA time series spline model.matrix design setup
limma
design
model.matrix
time series
splines
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
tleona3
• 0
0
votes
4
replies
1.5k
views
DESeq2 multifactor formula design
deseq2
time series
multiple factor design
updated 6.1 years ago by
Michael Love
43k • written 6.1 years ago by
Jane
• 0
1
vote
2
replies
1.5k
views
DESeq2: RNA-Seq time series analysis after removal of batch effect
deseq2
time series
remove batch effect
5.8 years ago
Nicola
• 0
1
vote
2
replies
2.2k
views
DeSEQ2- What is the difference between Gene Clustering and using LRT for Time Series experiment WITHOUT treatments
deseq2
Time Series
Gene Clustering
LRT
ATACseq
updated 5.8 years ago by
Michael Love
43k • written 5.8 years ago by
kaiser.karim
• 0
1
vote
2
replies
2.0k
views
Pair-wise Limma Analysis with time series data and two levels (control and treatment)
limma
microarray
time series
DEG
paired
updated 5.2 years ago by
Gordon Smyth
52k • written 5.2 years ago by
kawess
• 0
1
vote
2
replies
1.1k
views
Time series experiment analysis in DEseq2 without T=0 and three independent experiments with linked samples
deseq2
rnaseq
repeated measures
time series
design formula
updated 4.9 years ago by
Michael Love
43k • written 4.9 years ago by
Dorien
▴ 10
3
votes
2
replies
2.4k
views
DESeq2 time course model
deseq2
time series
time course
updated 4.3 years ago by
Michael Love
43k • written 4.3 years ago by
bsierieb
▴ 10
7
votes
2
replies
3.6k
views
Incorporating RUVSeq factors of unwanted variation in DESeq2 time course analysis
deseq2
ruvseq
spike-in
time course
time series
updated 7.0 years ago by
davide risso
▴ 980 • written 7.0 years ago by
staceyborrego
▴ 20
0
votes
2
replies
1.2k
views
Design matrix choice for time series experiment using limma
limma
time series
help
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
rm1238
• 0
0
votes
0
replies
831
views
clustering of scRNAseq gene expression at multiple time points
scRNA-seq
time series
4.4 years ago
Bogdan
▴ 670
1
vote
0
replies
1.0k
views
Job:
Bioinformatics PhD: The circadian clock in the ageing plant, University of York, UK
transcriptomics
gene expression
time series
plant biology
circadian
Job
5.2 years ago
dezer
▴ 10
12 results • Page
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Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
daldabrown9
• 0
For more info visit us on [R350 status check][1] [1]: https://sassagrantstatuscheck.co.za/
Answer: Margins for gene_set_enrichment_plot
by
Leonardo Collado Torres
★ 1.1k
Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 20
Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…
Comment: Help using rtracklayer for gene ID extraction
by
James W. MacDonald
67k
Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …
Votes
Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
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