Bioconductor Time series

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deseq2 ruvseq spike-in time course time series

updated 7.0 years ago by davide risso ▴ 980 • written 7.0 years ago by staceyborrego ▴ 20

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3.7k

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limma design model.matrix time series splines

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by tleona3 • 0

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2.4k

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deseq2 time series time course

updated 4.3 years ago by Michael Love 43k • written 4.3 years ago by bsierieb ▴ 10

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2.1k

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rna-seq time series patient limma-voom

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.3 years ago by aec ▴ 90

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2.0k

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limma microarray time series DEG paired

updated 5.2 years ago by Gordon Smyth 52k • written 5.2 years ago by kawess • 0

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1.0k

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transcriptomics gene expression time series plant biology circadian Job

5.2 years ago dezer ▴ 10

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1.1k

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deseq2 rnaseq repeated measures time series design formula

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by Dorien ▴ 10

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1.5k

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deseq2 time series remove batch effect

5.8 years ago Nicola • 0

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2.2k

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deseq2 Time Series Gene Clustering LRT ATACseq

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by kaiser.karim • 0

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1.2k

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limma time series help

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by rm1238 • 0

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1.5k

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deseq2 time series multiple factor design

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by Jane • 0

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832

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scRNA-seq time series

4.4 years ago Bogdan ▴ 670

12 results • Page 1 of 1

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Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by daldabrown9 • 0

For more info visit us on [R350 status check][1] [1]: https://sassagrantstatuscheck.co.za/

Answer: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k

Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…

Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20

Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…

Comment: Help using rtracklayer for gene ID extraction by James W. MacDonald 67k

Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…

Comment: miRTarRnaseq library by María Calvo • 0

Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …

Votes

Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?

Answer: Feature Counts - potential bug with outfile.jcounts

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2

Answer: Mapping Between GenBank ID's and Uniprot

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