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tophat
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python and R
snpeff
python
tophat
r
RNAseq123
updated 4.3 years ago by
Kevin Blighe
★ 4.0k • written 4.3 years ago by
kusum
• 0
0
votes
1
reply
1.3k
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
6.4 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
1.3k
views
Filtering Tophat/cufflinks data for GSEA with topGO
topGO
tophat
kolmogorov-smirnov test
updated 8.3 years ago by
James W. MacDonald
68k • written 8.3 years ago by
aaronrosenstein
• 0
2
votes
3
replies
2.7k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 9.0 years ago by
Thomas Girke
★ 1.7k • written 9.0 years ago by
abass.conteh
• 0
2
votes
9
replies
8.8k
views
Multiple alignments (multi-mapped reads) and DESeq/edgeR pipeline
deseq
deseq2
edger
tophat
bowtie
10.4 years ago
ysdel
▴ 40
0
votes
3
replies
2.8k
views
Error when counting reads in genes with summarizeOverlaps (Genomic-Aligments package)
rnaseq
summarizeOverlaps
deseq2
tophat
genomicalignments
updated 11.0 years ago by
Dan Tenenbaum
★ 8.2k • written 11.0 years ago by
alejandro.colaneri
▴ 20
6 results • Page
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Answer: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis
by
Michael Love
43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Answer: Integration: Paired-end vs healthy single-end from a different source
by
James W. MacDonald
68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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