Bioconductor Tophat

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votes

994

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snpeff python tophat r RNAseq123

updated 3.4 years ago by Kevin Blighe ★ 4.0k • written 3.4 years ago by kusum • 0

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1.0k

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noiseq rsubread tophat bowtie bowtie2

5.5 years ago Marcelo Laia ▴ 450

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1.1k

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topGO tophat kolmogorov-smirnov test

updated 7.5 years ago by James W. MacDonald 67k • written 7.5 years ago by aaronrosenstein • 0

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replies

2.4k

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R rnaseq tophat summarizeoverlaps systempiper

updated 8.1 years ago by Thomas Girke ★ 1.7k • written 8.1 years ago by abass.conteh • 0

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8.1k

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deseq deseq2 edger tophat bowtie

9.5 years ago ysdel ▴ 40

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2.6k

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rnaseq summarizeOverlaps deseq2 tophat genomicalignments

updated 10.1 years ago by Dan Tenenbaum ★ 8.2k • written 10.1 years ago by alejandro.colaneri ▴ 20

6 results • Page 1 of 1

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Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Answer: EuroBioC2023 abstract submission closing soon! by excess.gecko.shso • 0

Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…

Answer: EuroBioC2024 abstract submission is open! by excess.gecko.shso • 0

EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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