Bioconductor Tophat

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1.3k

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snpeff python tophat r RNAseq123

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by kusum • 0

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1.3k

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noiseq rsubread tophat bowtie bowtie2

6.6 years ago Marcelo Laia ▴ 450

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1.4k

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topGO tophat kolmogorov-smirnov test

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by aaronrosenstein • 0

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2.8k

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R rnaseq tophat summarizeoverlaps systempiper

updated 9.2 years ago by Thomas Girke ★ 1.7k • written 9.2 years ago by abass.conteh • 0

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8.9k

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deseq deseq2 edger tophat bowtie

10.6 years ago ysdel ▴ 40

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2.9k

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rnaseq summarizeOverlaps deseq2 tophat genomicalignments

updated 11.2 years ago by Dan Tenenbaum ★ 8.2k • written 11.2 years ago by alejandro.colaneri ▴ 20

6 results • Page 1 of 1

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Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0

Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…

Comment: Ensembl plants at annotationHub? by jwp48 • 0

Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!

Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k

Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…

Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10

Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…

Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k

Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…

Votes

Answer: Where do the filename come from in the LOLA datasets?

Bioconductor Maintainer Application

A: What is logFC and "B" in methylation analysis ??

limma moderated t-statistics and B-statistics

Comment: Guitar R package requires update due to dependency GenomicFeatures

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Popular Question to Lluís Revilla Sancho ▴ 760