Bioconductor Tophat

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970

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snpeff python tophat r RNAseq123

updated 3.3 years ago by Kevin Blighe ★ 4.0k • written 3.3 years ago by kusum • 0

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1.0k

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noiseq rsubread tophat bowtie bowtie2

5.5 years ago Marcelo Laia ▴ 450

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1.1k

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topGO tophat kolmogorov-smirnov test

updated 7.4 years ago by James W. MacDonald 67k • written 7.4 years ago by aaronrosenstein • 0

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2.4k

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R rnaseq tophat summarizeoverlaps systempiper

updated 8.1 years ago by Thomas Girke ★ 1.7k • written 8.1 years ago by abass.conteh • 0

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8.0k

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deseq deseq2 edger tophat bowtie

9.4 years ago ysdel ▴ 40

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2.6k

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rnaseq summarizeOverlaps deseq2 tophat genomicalignments

updated 10.0 years ago by Dan Tenenbaum ★ 8.2k • written 10.0 years ago by alejandro.colaneri ▴ 20

6 results • Page 1 of 1

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Votes

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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