Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
txImportData
•
reset
1
vote
2
replies
280
views
The default value of 'abundanceCol'
tximportData
4 months ago
Jinghua
• 0
0
votes
1
reply
446
views
Error: lexical error: invalid char in json text (alevin-seurat)
tximpo
tximportData
alevinQC
updated 10 months ago by
ATpoint
★ 5.0k • written 10 months ago by
ptlsugam
• 0
0
votes
2
replies
863
views
Need new version : tx2gene.gencode.v47.csv
tximportData
12 months ago • updated 6 months ago
Gaurav
• 0
4
votes
5
replies
1.4k
views
DESeq Input from Salmon + tximport/tximeta
tximportData
summarizeToGene
tximport
DESeq2
salmon
13 months ago
LuciaNhu
• 0
0
votes
4
replies
1.0k
views
Create count matrix from multible quant sf files from different directories
tximportData
tximport
salmon
19 months ago
JG13
• 0
2
votes
9
replies
2.5k
views
Importing RSEM processed data already formatted as a summarized experiment into DESeq2
tximport
tximportData
DESeq2
2.5 years ago
Ndimensional
▴ 20
0
votes
2
replies
1.3k
views
tximport error in reading salmon output files?
tximport
tximportData
updated 23 months ago by
Matteo
• 0 • written 2.5 years ago by
barrypraveen
• 0
2
votes
3
replies
2.2k
views
Error while reading rsem files in tximport
DESeq2
tximport
rsem
RNASeq
tximportData
3.1 years ago
mohammedtoufiq91
▴ 10
3
votes
3
replies
1.8k
views
What is the correct way to import transcript abundances from 3' Quantseq results that calculated by kallisto?
tximport
tximportData
Quantseq
kallisto
3.2 years ago • updated 3.1 years ago
duhwa.lee
• 0
0
votes
4
replies
2.0k
views
Alternative for wininet method in tximeta
DESeq2
tximport
tximportData
tximeta
3.5 years ago
uhlkatie
• 0
2
votes
3
replies
1.6k
views
Import RSEM output without sample data
DESeq2
tximportData
tximport
updated 3.9 years ago by
Michael Love
43k • written 3.9 years ago by
Luisa
• 0
0
votes
3
replies
1.4k
views
tximport fails when RSEM output options produce files with additional columns?
DESeq2
tximportData
tximpor
updated 4.5 years ago by
Michael Love
43k • written 4.5 years ago by
Alexander
• 0
0
votes
1
reply
1.2k
views
Multi-factor Analysis in DeSEQ2
tximport
R
tximportData
RNASeq
DESeq2
updated 4.6 years ago by
Michael Love
43k • written 4.6 years ago by
pthom010
• 0
0
votes
7
replies
2.5k
views
Problem with Tximport
tximportData
tximport
4.9 years ago
agoesmartini
• 0
0
votes
1
reply
1.3k
views
How to use tx import on output of abundance file
tximportData
tximport
updated 5.1 years ago by
Kevin Blighe
★ 4.0k • written 5.1 years ago by
Julie
• 0
0
votes
4
replies
1.9k
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon
tximport
tximportdata
ensembl
updated 5.7 years ago by
Michael Love
43k • written 5.7 years ago by
slouis
• 0
1
vote
2
replies
1.5k
views
What is the expected location of bootstrap samples relative to quant.sf file ?
tximport
tximportdata
salmon
7.2 years ago
fcuy047
• 0
1
vote
2
replies
1.6k
views
trouble importing data for DEseq2 workflow
deseq2
tximport
tximportdata
pasilla
Tutorial
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
Stanley Yang
• 0
1
vote
8
replies
38k
views
How to create tx2gene.gencode.v27.csv
tximportdata
updated 7.5 years ago by
Michael Love
43k • written 7.5 years ago by
mmokrejs
• 0
2
votes
6
replies
2.2k
views
[DESeq2] Different results from tutorial
deseq2
tximportdata
tximport
updated 7.6 years ago by
Michael Love
43k • written 7.6 years ago by
changhan1110
• 0
0
votes
1
reply
3.1k
views
could not find function "tximport"
tximportdata
updated 7.8 years ago by
Gordon Smyth
53k • written 7.8 years ago by
s.corley
▴ 30
0
votes
9
replies
4.3k
views
Upgrade bioconductor 3.2 to 3.3
bioclIte
tximportData
updated 7.9 years ago by
hauken_heyken
▴ 80 • written 9.5 years ago by
jarod_v6@libero.it
▴ 40
0
votes
3
replies
16k
views
Problem installing tximportData
tximportdata
8.8 years ago
elg
• 0
3
votes
5
replies
3.3k
views
txImport: a gene seems missing from the sample data
txImportData
txImport
updated 4.9 years ago by
James W. MacDonald
68k • written 8.8 years ago by
alexlok
• 0
1
vote
1
reply
2.2k
views
How to remove genes with 0 counts in tximport?
tximport
deseq
tximportdata
deseq2
updated 8.9 years ago by
Michael Love
43k • written 8.9 years ago by
Peter Alto
▴ 20
0
votes
7
replies
2.3k
views
PCA results different from th same sample but different counting method
deseq2
pca
tximportdata
htseqcounts
updated 9.5 years ago by
Michael Love
43k • written 9.5 years ago by
jarod_v6@libero.it
▴ 40
26 results • Page
1 of 1
Recent ...
Replies
Comment: nice 3D displays for PCA analysis
by
adam80haynes
• 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital
by
TikTsokaasocissalpc
• 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
TikTsokaasocissalpc
• 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long?
by
ATpoint
★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Votes
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Awards
• All
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Istvan Albert
▴ 50
Popular Question
to
Dario Strbenac
★ 1.6k
Locations
• All
Barcelona, Spain,
2 minutes ago
Singapore,
7 minutes ago
The city by the bay,
16 minutes ago
United States,
4 hours ago
United States,
7 hours ago
Traffic: 858 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6