Bioconductor Ucsctrack

Showing : ucsctrack • reset

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Gviz protein visualization UcscTrack protein domains

updated 4.2 years ago by James W. MacDonald 67k • written 4.2 years ago by paul.jaschke ▴ 10

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rtracklayer UCSC ucsctrack

updated 6.9 years ago by James W. MacDonald 67k • written 6.9 years ago by zhangqshxxzz • 0

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gviz ucsctrack hgnc

updated 7.5 years ago by James W. MacDonald 67k • written 7.5 years ago by Greg G. • 0

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Gviz-package biomart plottracks ucsctrack stickleback

updated 7.6 years ago by florian.hahne@novartis.com ★ 1.6k • written 7.7 years ago by br • 0

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ucsc ucsctrack ggbio Gviz hg19

updated 7.7 years ago by maximilianh ▴ 10 • written 7.7 years ago by metamaden ▴ 10

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gviz ucsctrack genesymbols

8.0 years ago dmb107 • 0

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givz UcscTrack

8.2 years ago shuoguo ▴ 10

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Gviz gene names thinBoxFeature UCSCtrack

8.2 years ago angela.heck • 0

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gviz BED Ucsc UcscTrack

8.8 years ago Andy91 ▴ 60

9 results • Page 1 of 1

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample.

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…

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Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

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