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xml
•
reset
8
votes
20
replies
5.7k
views
Issue when import genomic features from the file :Error in parseURI("") : cannot parse URI (issue resolved)
genomicfeatures
xml
libxml2
7.2 years ago
JunLVI
▴ 40
1
vote
12
replies
3.2k
views
Rcytoscape Rstudio Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems
software error
rcytoscape
xml
updated 9.5 years ago by
drsuuzzz
• 0 • written 9.5 years ago by
alessandro brozzi
▴ 120
0
votes
6
replies
2.7k
views
not able to install geoquery package
microarrays
xml
RCurl
libxml2
libcurl
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
farahqureshi5
• 0
3
votes
6
replies
2.8k
views
function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress
xml
rcurl
http
EBI
updated 6.6 years ago by
Wolfgang Huber
★ 13k • written 6.6 years ago by
Bernd Klaus
▴ 610
2
votes
6
replies
3.3k
views
Fixing download.kegg, from pathview(), which returns empty xml
pathview
download.kegg()
xml
updated 8.6 years ago by
Luo Weijun
★ 1.6k • written 8.7 years ago by
lucmoitinho
• 0
1
vote
3
replies
1.5k
views
unable to install DESeq2 there is no package called XML
deseq2
bioconductor
windows
xml
installation
updated 3.8 years ago by
Michael Love
41k • written 3.8 years ago by
sarah3
• 0
0
votes
3
replies
1.4k
views
Can't install DESeq2 because of libxml
deseq2
libxml
xml
updated 2.9 years ago by
Michael Love
41k • written 2.9 years ago by
Fátima
• 0
2
votes
3
replies
3.4k
views
How to convert graphNEL object into Adjacency Matrix?
graph
kegggraph
xml
updated 7.0 years ago by
Robert Castelo
★ 3.3k • written 7.0 years ago by
urwaCFC
• 0
3
votes
2
replies
6.7k
views
errors when installing cummeRbund package
Install
cummerbund
Rcurl
xml
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
dnajuice
▴ 20
0
votes
2
replies
8.0k
views
Error with "library("GenomicFeatures")" - "there is no package called ‘XML’"
genomicfeatures
xml
loadnamespace
9.0 years ago
greg.mulhearn
• 0
0
votes
2
replies
1.2k
views
Issue with xml files downloaded with `pathview()`
pathview
kegg
xml
updated 4.8 years ago by
Luo Weijun
★ 1.6k • written 4.8 years ago by
anamaria
▴ 10
0
votes
1
reply
2.3k
views
"Error in readRDS" while trying to install XML package
xml
install
8.8 years ago
jason.harris
• 0
1
vote
1
reply
2.0k
views
uploading xml file in flowworkspace
flowworkspace
xml
R
flowjo
updated 4.5 years ago by
Abby Moore
• 0 • written 7.1 years ago by
Ekaterina Terskikh
▴ 10
0
votes
1
reply
1.2k
views
Accessing local installation of biomart results in "Unexpected format to the list of available marts"
mart
martconfigurator
biomaRt
xml
updated 3.4 years ago by
Mike Smith
★ 6.5k • written 3.4 years ago by
anhvo711
• 0
0
votes
1
reply
911
views
objNameToList() on some particular list of objects in parent frame
tkWidgets
xml
kegggraph
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
urwaCFC
• 0
15 results • Page
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Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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