Showing : yeast • reset
3
votes
4
replies
1.6k
views
ORF lengths using Yeast Annotation package
yeast genomicranges
9.6 years ago • updated 9.5 years ago dktarathym • 0
0
votes
4
replies
1.2k
views
Gostats with Yeast annotation
Annotation GO Yeast GOstats Annotation GO Yeast GOstats
updated 15.8 years ago by ★ 7.2k • written 15.8 years ago by ▴ 650
0
votes
3
replies
1.1k
views
Error doing Mas5 calculation with Simpleaffy package
Yeast affy simpleaffy Yeast affy simpleaffy
updated 20.0 years ago by ★ 1.1k • written 20.0 years ago by ▴ 50
0
votes
15
replies
2.9k
views
Rsubread crashes in 32bit linux
Yeast Rsubread Yeast Rsubread
updated 11.9 years ago by ★ 3.6k • written 11.9 years ago by ★ 3.3k
0
votes
2
replies
1000
views
SimpleAffy: problem with Yeast Genome 2.0 Array
Yeast cdf simpleaffy Yeast cdf simpleaffy
updated 18.5 years ago by ★ 2.2k • written 18.5 years ago by ▴ 170
0
votes
2
replies
1.1k
views
Probe pairs location on chips // ANOVA
Yeast ygs98 probe affy Yeast ygs98 probe affy
updated 22.0 years ago by ▴ 280 • written 22.0 years ago by ▴ 50
0
votes
2
replies
818
views
affy package and segmentation error
Yeast Yeast
updated 19.5 years ago by ▴ 950 • written 19.5 years ago by ▴ 40
0
votes
3
replies
1.2k
views
trouble using GCRMA
Yeast cdf gcrma Yeast cdf gcrma
updated 16.9 years ago by ▴ 200 • written 16.9 years ago by ▴ 10
0
votes
2
replies
930
views
affy cel + cdf files content
Yeast cdf probe Yeast cdf probe
21.9 years ago Laurent Gautier ★ 2.3k
0
votes
3
replies
1.1k
views
getting closer on YEAST 2.0 annotation...
Annotation GUI Yeast probe Annotation GUI Yeast probe
updated 19.2 years ago by ★ 2.9k • written 19.2 years ago by ▴ 320
0
votes
2
replies
1.2k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 30
0
votes
3
replies
1.3k
views
Error using getMeans function in Ringo/Starr
Yeast probe Ringo Yeast probe Ringo
14.0 years ago Noah Dowell ▴ 410
0
votes
10
replies
1.6k
views
how to build a GOstats-compatible annotation package for plasmodium falciparum?
Annotation Yeast GOstats Annotation Yeast GOstats
updated 16.5 years ago by ▴ 30 • written 16.5 years ago by ★ 1.1k
0
votes
2
replies
2.0k
views
GOSim yeast
GO Yeast GOSim GO Yeast GOSim
updated 7.1 years ago by • 0 • written 12.0 years ago by ★ 13k
0
votes
2
replies
867
views
index between genes and pathways
Pathways GO Yeast Pathways GO Yeast
updated 20.5 years ago by ★ 5.5k • written 20.5 years ago by ▴ 80
0
votes
2
replies
1.4k
views
New gage package: Generally Applicable Gene-set/Pathway Analysis
Sequencing Microarray Pathways GO Yeast gage Sequencing Microarray Pathways GO Yeast
13.6 years ago • updated 13.5 years ago Luo Weijun ★ 1.6k
3
votes
3
replies
2.0k
views
Goseq and yeast
goseq yeast
9.2 years ago Marek Gierlinski ▴ 30
0
votes
2
replies
1.5k
views
annaffy: YEAST vs. Affy YEAST_2 annotation
Annotation Yeast probe annaffy AnnBuilder Annotation Yeast probe annaffy AnnBuilder
updated 19.2 years ago by ▴ 220 • written 19.2 years ago by ▴ 320
0
votes
2
replies
1.1k
views
trouble with yeastann function in AnnBuilder
Annotation Yeast probe AnnBuilder safe Annotation Yeast probe AnnBuilder safe
updated 19.3 years ago by ▴ 10 • written 19.3 years ago by ▴ 320
0
votes
3
replies
1.4k
views
Gostats with Yeast annotation
Microarray Annotation GO Cancer Yeast GOstats Microarray Annotation GO Cancer Yeast
15.2 years ago Yolande Tra ▴ 160
0
votes
8
replies
2.0k
views
Rsubread alingner
Alignment Yeast Rsubread Alignment Yeast Rsubread
13.0 years ago Wei Shi ★ 3.6k
0
votes
2
replies
2.5k
views
org.Sc.sgd.db: Yeast ensembl ID to entrez ID conversion problem
GO Yeast GO Yeast
14.1 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.0k
views
Several questions goCluster and GOstats...
Annotation GO Visualization Yeast goCluster Annotation GO Visualization Yeast goCluster
updated 18.7 years ago by ▴ 60 • written 18.7 years ago by ▴ 140
0
votes
1
reply
754
views
Question about affy
Yeast affy Yeast affy
updated 21.1 years ago by ★ 2.3k • written 21.1 years ago by ▴ 10
0
votes
1
reply
1.1k
views
simLL method in GOstats to measure distances between yeast genes
Yeast hgu95av2 ygs98 Yeast hgu95av2 ygs98
updated 19.0 years ago by ★ 5.5k • written 19.0 years ago by ▴ 100
0
votes
1
reply
1.0k
views
Cho et al.'s Expression Dataset in Yeast
Yeast cycle Yeast cycle
updated 19.0 years ago by ▴ 60 • written 19.0 years ago by ▴ 20
0
votes
1
reply
930
views
problem reading yeast data
Microarray Yeast cdf Microarray Yeast cdf
updated 21.3 years ago by ★ 2.3k • written 21.3 years ago by ▴ 10
0
votes
2
replies
1.7k
views
GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation GO Yeast db0 probe topGO AnnotationDbi Annotation GO Yeast db0 probe topGO
updated 14.9 years ago by ★ 7.2k • written 14.9 years ago by ▴ 20
0
votes
1
reply
1.0k
views
gocluster error: Ontology MF has no GO terms left. in
Annotation GO Yeast mgug4122a goCluster Annotation GO Yeast mgug4122a goCluster
updated 18.3 years ago by ▴ 60 • written 18.3 years ago by ▴ 30
0
votes
1
reply
1.1k
views
Annotating yeast ORFs with GO and KEGG
GO Yeast annotate Category GO Yeast annotate Category
updated 20.5 years ago by ▴ 70 • written 20.5 years ago by ▴ 80
0
votes
1
reply
1.2k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 14.5 years ago by ▴ 430 • written 14.5 years ago by ▴ 410
0
votes
6
replies
1.6k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast ChIPpeakAnno Starr Yeast ChIPpeakAnno Starr
updated 13.9 years ago by ★ 4.3k • written 13.9 years ago by ▴ 410
0
votes
1
reply
873
views
Microarray data with outliers
Yeast Yeast
updated 16.5 years ago by 21k • written 16.5 years ago by ▴ 70
0
votes
5
replies
1.3k
views
affy Yeast 2.0 annotation
Annotation Yeast affy limma AnnBuilder Annotation Yeast affy limma AnnBuilder
updated 19.3 years ago by 6.7k • written 19.3 years ago by ▴ 320
0
votes
1
reply
1.2k
views
GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 180
0
votes
2
replies
1.2k
views
biological reps and dye-swaps and duplicate spots in a common reference design
Yeast limma a4 Yeast limma a4
updated 15.5 years ago by ★ 2.0k • written 15.5 years ago by ▴ 10
0
votes
9
replies
1.2k
views
Help with 'annotation' in GOHyeprGParamsClass
Annotation GO Yeast Category Annotation GO Yeast Category
updated 15.5 years ago by ★ 5.5k • written 15.5 years ago by ▴ 50
0
votes
4
replies
1.1k
views
applicability of tilingArray package
Normalization Yeast affy tilingArray Normalization Yeast affy tilingArray
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 50
0
votes
2
replies
1.1k
views
YEAST package
Pathways Yeast Pathways Yeast
14.6 years ago suman Duvvuru ▴ 20
0
votes
3
replies
831
views
Yeast and LocuslinkIDs
GO Yeast GO Yeast
updated 19.3 years ago by 21k • written 19.3 years ago by ▴ 60
0
votes
1
reply
951
views
GOENTREZID2GO hard-coded in GOstats:makeGOGraph
Annotation GO Network Yeast graph GOstats Annotation GO Network Yeast graph GOstats
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ★ 1.1k
0
votes
1
reply
1.6k
views
create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 16.8 years ago by 25k • written 16.8 years ago by ▴ 30
0
votes
1
reply
3.2k
views
RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 30
0
votes
6
replies
1.3k
views
Sc03b_MR_v04 CDF package
Genetics Yeast cdf Genetics Yeast cdf
updated 15.7 years ago by 65k • written 15.7 years ago by ▴ 50
0
votes
5
replies
1.6k
views
KEGG & hyperGTest: an example?
Annotation Yeast Organism Annotation Yeast Organism
updated 16.5 years ago by ▴ 150 • written 16.5 years ago by ★ 1.1k
0
votes
1
reply
1.3k
views
[Bioc-devel] SNPscan -> SNPchip
SNP Annotation Yeast Biobase SNPchip SNP Annotation Yeast Biobase SNPchip
updated 17.5 years ago by ▴ 250 • written 17.5 years ago by ▴ 170
0
votes
2
replies
888
views
Run GOHyperG on yeast without specifying a chip
Microarray Yeast PROcess Microarray Yeast PROcess
updated 17.8 years ago by 65k • written 17.8 years ago by ▴ 100
0
votes
1
reply
665
views
Affymetrix Yeast Tiling Arrays
Yeast affy Yeast affy
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 50
0
votes
1
reply
801
views
yeast2 LOCUSID environment
Annotation Yeast yeast2 Annotation Yeast yeast2
updated 17.9 years ago by ★ 2.9k • written 17.9 years ago by ▴ 320
50 results • Page 1 of 1
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
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