Showing : zebrafish • reset
0
votes
9
replies
1.9k
views
Mapping microarray probes to the genome using findOverlaps
Microarray Alignment Annotation zebrafish probe Biostrings GenomicFeatures Microarray
updated 13.2 years ago by 21k • written 13.2 years ago by 16k
0
votes
6
replies
1.1k
views
annaffy can't saveHTML
Annotation zebrafish Annotation zebrafish
updated 14.2 years ago by 65k • written 14.2 years ago by ★ 1.5k
0
votes
5
replies
1.3k
views
Agilent zebrafish4x44 database
zebrafish zebrafish
updated 14.5 years ago by ★ 1.3k • written 14.5 years ago by ▴ 460
0
votes
4
replies
1.1k
views
Error in AnnBuilder writeAnnData2Pkg
Annotation zebrafish AnnBuilder Annotation zebrafish AnnBuilder
updated 19.0 years ago by ★ 2.9k • written 19.0 years ago by ▴ 510
0
votes
3
replies
1.2k
views
chromosome plot
zebrafish geneplotter zebrafish geneplotter
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 160
0
votes
3
replies
1.7k
views
Mapping microarray probes to the genome using findOverlaps
Alignment Annotation zebrafish probe Alignment Annotation zebrafish probe
updated 13.2 years ago by 21k • written 13.2 years ago by ▴ 140
0
votes
2
replies
1.4k
views
Need help annotating Affymetrix 1.1ST microarrays
oligo annotation affymetrix microarrays zebrafish
updated 7.6 years ago by ★ 3.9k • written 7.7 years ago by ▴ 70
0
votes
2
replies
1.8k
views
TxDb file for Drerio (ie zebrafish)
Organism zebrafish CRISPRseek Organism zebrafish CRISPRseek
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 10
0
votes
2
replies
1.3k
views
blast probe clusters when using Affymetrix Gene Array Strips
zebrafish zebrafish
updated 10.7 years ago by 65k • written 10.7 years ago by ▴ 80
0
votes
2
replies
1.1k
views
Interspecies differential expression of orthologs with Edger
RNASeq Normalization Organism zebrafish edgeR
updated 9.7 years ago by 50k • written 9.7 years ago by ▴ 140
0
votes
2
replies
1.8k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt zebrafish biomaRt
updated 11.3 years ago by ★ 1.6k • written 11.3 years ago by ★ 13k
0
votes
2
replies
1.6k
views
Help with loading newly created custom annotation db into R session
Annotation GO GUI zebrafish probe Annotation GO GUI zebrafish probe
updated 15.3 years ago by 65k • written 15.3 years ago by ▴ 300
0
votes
2
replies
994
views
simpleaffy QCstats and affyQAReport repost
zebrafish probe affy zebrafish probe affy
updated 16.8 years ago by ★ 1.1k • written 16.8 years ago by ▴ 70
0
votes
2
replies
1.1k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.8 years ago by ▴ 780 • written 18.8 years ago by ★ 1.4k
0
votes
2
replies
1.5k
views
agilent zebrafish array annotation
Annotation zebrafish AnnBuilder PROcess AnnotationDbi Annotation zebrafish AnnBuilder
16.1 years ago Georg Otto ▴ 510
1
vote
1
reply
1.8k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 10.6 years ago by 65k • written 10.6 years ago by ▴ 80
0
votes
1
reply
961
views
Invalid "marrayInfo" object
zebrafish zebrafish
updated 20.8 years ago by ▴ 920 • written 20.8 years ago by ▴ 230
0
votes
1
reply
738
views
affymetrix zebrafish chip
zebrafish zebrafish
updated 19.8 years ago by 65k • written 19.8 years ago by ▴ 140
0
votes
1
reply
765
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 19.6 years ago by 65k • written 19.6 years ago by ▴ 510
0
votes
1
reply
1.2k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.8 years ago by ★ 1.4k • written 18.8 years ago by ★ 1.1k
0
votes
1
reply
1.2k
views
biomaRt gives only NA output
drosgenome1 zebrafish biomaRt drosgenome1 zebrafish biomaRt
updated 18.6 years ago by ▴ 420 • written 18.6 years ago by ▴ 150
0
votes
1
reply
802
views
zebrafish annotation
Annotation zebrafish Annotation zebrafish
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 60
0
votes
1
reply
1.4k
views
Group-wise gcrma normalization
Microarray Normalization Clustering zebrafish probe gcrma Microarray Normalization probe
updated 15.2 years ago by ★ 6.5k • written 15.2 years ago by ▴ 30
0
votes
1
reply
842
views
siggenes: sam2html + affymetrix zebrafish
zebrafish zebrafish
14.9 years ago Bio Sam ▴ 60
0
votes
1
reply
721
views
GOstats testing using EntrezGene IDs not in chip-specific annotation package?
GO zebrafish probe affy GOstats AnnotationDbi GO zebrafish probe affy GOstats
updated 14.3 years ago by ★ 2.0k • written 14.3 years ago by ★ 2.0k
0
votes
1
reply
954
views
GOstats - zebrafish
Annotation GO zebrafish probe Annotation GO zebrafish probe
updated 14.0 years ago by 65k • written 14.0 years ago by ▴ 460
0
votes
1
reply
1.1k
views
Annotation in Agi4x44PreProcess
Annotation zebrafish probe Agi4x44PreProcess Annotation zebrafish probe Agi4x44PreProcess
updated 13.8 years ago by ★ 7.2k • written 13.8 years ago by ▴ 40
0
votes
1
reply
1.1k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 13.8 years ago by ★ 7.2k • written 13.8 years ago by ▴ 40
0
votes
1
reply
1.4k
views
Useful information about Ensembl release 67 mart databases
miRNA GO Caenorhabditis elegans Sus scrofa zebrafish PolyPhen SIFT miRNA GO Sus scrofa
12.0 years ago Thomas Maurel ▴ 800
1
vote
1
reply
2.9k
views
goseq/nullp with non-native identifiers
Annotation GO zebrafish goseq Annotation GO zebrafish goseq
updated 11.7 years ago by ▴ 100 • written 11.7 years ago by ▴ 140
0
votes
1
reply
1.0k
views
affymtrix transcript_cluster categories
Normalization zebrafish Normalization zebrafish
updated 10.6 years ago by 65k • written 10.6 years ago by ▴ 80
0
votes
1
reply
1.3k
views
ChIPpeakAnno, getAnnotation question
Annotation GO zebrafish convert biomaRt ChIPpeakAnno Annotation GO zebrafish convert
updated 10.6 years ago by ★ 4.3k • written 10.6 years ago by ★ 13k
0
votes
1
reply
1.3k
views
ChIPpeakAnno, getAnnotation question
Annotation zebrafish convert biomaRt ChIPpeakAnno Annotation zebrafish convert biomaRt
updated 10.6 years ago by ★ 4.3k • written 10.6 years ago by ▴ 10
9
votes
1
reply
2.2k
views
News: Ensembl release 80 is out!
biomart Ensembl zebrafish Rat 1000 genomes phase 3 News
updated 9.0 years ago by ▴ 390 • written 9.0 years ago by ▴ 800
0
votes
1
reply
1.3k
views
Importing and Extracting Annotation
annotation zebrafish probe
updated 8.1 years ago by 65k • written 8.1 years ago by • 0
0
votes
0
replies
840
views
homologs for xenopus laevis
Xenopus laevis zebrafish biomaRt Xenopus laevis zebrafish biomaRt
16.6 years ago Mayte Suarez-Farinas ▴ 510
0
votes
0
replies
1.1k
views
Agi4x44PreProcess
GUI zebrafish probe AgiMicroRna GUI zebrafish probe AgiMicroRna
13.6 years ago Neel Aluru ▴ 460
0
votes
0
replies
1.1k
views
biomaRt zebrafish
zebrafish biomaRt zebrafish biomaRt
18.7 years ago Georg Otto ▴ 510
0
votes
0
replies
838
views
agilent zebrafish array annotation package
zebrafish zebrafish
18.3 years ago Georg Otto ▴ 510
0
votes
0
replies
1.3k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt ideogram genomes zebrafish biomaRt ideogram genomes
11.2 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
0
replies
1.5k
views
Useful information about Ensembl release 71 mart databases
zebrafish PolyPhen SIFT affy genomes zebrafish PolyPhen SIFT affy genomes
11.1 years ago Thomas Maurel ▴ 800
0
votes
0
replies
809
views
Bsgenome Zv7 sequence data
Cancer Danio rerio zebrafish Cancer Danio rerio zebrafish
14.8 years ago Hervé Pagès 16k
0
votes
0
replies
953
views
problem using annotation database with annaffy
Annotation GO zebrafish annaffy Annotation GO zebrafish annaffy
15.0 years ago Georg Otto ▴ 510
0
votes
0
replies
1.2k
views
biomaRt zebrafish
zebrafish biomaRt zebrafish biomaRt
18.7 years ago Steffen Durinck ▴ 420
0
votes
0
replies
931
views
Ensembl mart release 54: Useful information
Coverage zebrafish Coverage zebrafish
15.0 years ago Rhoda Kinsella ▴ 660
0
votes
0
replies
1.1k
views
Ensembl mart release 57: Useful information
SNP GO Homo sapiens zebrafish SNP GO Homo sapiens zebrafish
14.2 years ago Rhoda Kinsella ▴ 660
0
votes
0
replies
1.3k
views
Useful information about Ensembl release 76 mart databases
Transcription zebrafish Transcription zebrafish
9.7 years ago Thomas Maurel ▴ 800
0
votes
0
replies
1.4k
views
AgiMicroRna - FilterMicroRna and SignificantMicroRna function
miRNA zebrafish probe AgiMicroRna miRNA zebrafish probe AgiMicroRna
14.0 years ago Neel Aluru ▴ 460
0
votes
0
replies
828
views
QC questions
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
19.6 years ago Crispin Miller ★ 1.1k
0
votes
0
replies
889
views
Re: lm.series, design matrix
zebrafish limma zebrafish limma
20.8 years ago James Wettenhall ▴ 1000
50 results • Page 1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Locations • All
France, just now
WEHI, Melbourne, Australia, 14 minutes ago
Australia, 19 minutes ago
United States, 31 minutes ago
United States, 51 minutes ago
Traffic: 679 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6