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5
votes
25
replies
829
views
limma models out of memory issue on Slurm HPC
Regression limma STATISITICS HPC
updated 22 days ago by 50k • written 4 weeks ago by ▴ 10
0
votes
4
replies
347
views
limma with interaction term
R biostatistics limma Epigenetics
11 weeks ago • updated 8 weeks ago Jitendra ▴ 10
1
vote
4
replies
386
views
limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
updated 10 weeks ago by 50k • written 11 weeks ago by ▴ 10
0
votes
0
replies
219
views
multipollutant models
statistics Regression r limma
4 months ago Jitendra ▴ 10
0
votes
5
replies
594
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 6 months ago by 65k • written 6 months ago by ▴ 10
3
votes
4
replies
832
views
DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
7 months ago Jitendra ▴ 10
1
vote
1
reply
347
views
Further analysis after limma regression output
statistics Epigenetics limma
updated 7 months ago by 65k • written 7 months ago by ▴ 10
5
votes
5
replies
782
views
limma output for epic array methylation data
linearregression epicarray MethylationArray limma
8 months ago Jitendra ▴ 10
0
votes
3
replies
917
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 11 months ago by ▴ 780 • written 11 months ago by ▴ 10
0
votes
0
replies
474
views
combat for batch effect correction in EPIC array data
Epigenetics combat EPIC
13 months ago Jitendra ▴ 10
0
votes
0
replies
555
views
How to find regulatory region position and associated genes for CpG sites
Epigenetics R Bioconducter
14 months ago Jitendra ▴ 10
0
votes
17
replies
1.7k
views
How to check linear model
modalmatrix limma R linear
14 months ago Jitendra ▴ 10
0
votes
3
replies
936
views
batch effect in EPIC array data
statistics Epigenetics R
updated 14 months ago by ▴ 730 • written 14 months ago by ▴ 10
0
votes
0
replies
420
views
rnbeads inference
epigenetics RnBeads
15 months ago Jitendra ▴ 10
0
votes
2
replies
855
views
ggplot2 bar plot
R Visualization ggplot2
18 months ago Jitendra ▴ 10
0
votes
6
replies
1.3k
views
regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
23 months ago Jitendra ▴ 10
0
votes
0
replies
561
views
normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
2.1 years ago Jitendra ▴ 10
0
votes
0
replies
707
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.1 years ago Jitendra ▴ 10
4
votes
8
replies
2.1k
views
R package installation error
HPC R Bioconducter
2.1 years ago Jitendra ▴ 10
0
votes
8
replies
1.9k
views
error in RnBeads installation
Epigenetics RnBeads R
2.1 years ago Jitendra ▴ 10
0
votes
3
replies
1.5k
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 2.2 years ago by 21k • written 2.3 years ago by ▴ 10
3
votes
16
replies
4.4k
views
How to add pseudocount to DESeq2 dds object
deseq2 r
updated 2.5 years ago by ▴ 10 • written 3.6 years ago by ▴ 10
0
votes
4
replies
501
views
How to mention control by using contrast command in DESeq2
DESeq2
3.6 years ago Jitendra ▴ 10
1
vote
2
replies
887
views
GOSeq analysis in rice
goseq
3.8 years ago • updated 3.7 years ago Jitendra ▴ 10
0
votes
1
reply
6.7k
views
How to make PCA plot using DESeq2 for a group design
deseq2
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by ▴ 10
0
votes
1
reply
540
views
LFC shrinkage Normal_vs_apeglm
deseq2
updated 4.2 years ago by 41k • written 4.2 years ago by ▴ 10
0
votes
5
replies
728
views
deseq2 differential gene expression and fold change
deseq2
4.4 years ago Jitendra ▴ 10
1
vote
3
replies
763
views
deseq2 formula design
deseq2
updated 4.8 years ago by ★ 1.3k • written 4.8 years ago by ▴ 10
0
votes
0
replies
694
views
taxonomy download from NCBI based on geneID
biomartr Bioconducter
4.8 years ago Jitendra ▴ 10
0
votes
1
reply
722
views
vegdist for beta diversity
vegan
4.8 years ago Jitendra ▴ 10
0
votes
3
replies
1.1k
views
phyloseq to edgeR
edger
updated 4.9 years ago by 50k • written 4.9 years ago by ▴ 10
0
votes
10
replies
1.9k
views
Phyloseq to metagenomeSeq
limma metagenomeSeq
4.9 years ago Jitendra ▴ 10
0
votes
1
reply
555
views
Phylpseq to deseq2
deseq2
updated 5.0 years ago by 41k • written 5.0 years ago by ▴ 10
0
votes
5
replies
925
views
DESeq not showing all coefficient
deseq2
updated 5.0 years ago by 41k • written 5.0 years ago by ▴ 10
0
votes
2
replies
1.9k
views
no gene names in deseq2 result file
deseq2
updated 5.0 years ago by 41k • written 5.0 years ago by ▴ 10
0
votes
15
replies
2.7k
views
Phyloseq to deseq2
deseq2
updated 5.1 years ago by 41k • written 5.1 years ago by ▴ 10
0
votes
4
replies
858
views
Dendogram from read count to show correlation between biological replicate and samples
bioconductor
updated 6.9 years ago by 65k • written 6.9 years ago by ▴ 10
1
vote
9
replies
1.4k
views
DESeq2 differential gene expression with multiple development stage and tissues
deseq2
updated 6.9 years ago by 41k • written 6.9 years ago by ▴ 10
1
vote
1
reply
1.1k
views
error in DESeq installationm
software error
updated 7.5 years ago by 65k • written 7.5 years ago by ▴ 10
0
votes
1
reply
559
views
How to prepre sample condition and sample info
deseq2
updated 7.5 years ago by 41k • written 7.5 years ago by ▴ 10
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