Showing : STATISTICS • reset
0
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6
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208
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
4 weeks ago nabiyogesh ▴ 10
0
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3
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367
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Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 4 months ago by 21k • written 5 months ago by ▴ 10
3
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5
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629
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P adjusted values in Deseq2
DESeq2 Statistics
written 17 months ago by • 0
0
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0
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190
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
8 months ago Wolfgang Huber 13k
0
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0
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361
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
15 months ago • updated 13 months ago Luo Weijun ★ 1.5k
0
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0
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361
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Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
15 months ago m.jackson • 0
0
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0
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357
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
17 months ago António Miguel de Jesus Domingues ▴ 480
0
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0
replies
459
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
18 months ago Laura • 0
0
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0
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343
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
19 months ago • updated 15 months ago Luo Weijun ★ 1.5k
1
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2
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326
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 20 months ago by 37k • written 20 months ago by ▴ 40
2
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0
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382
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
21 months ago Johannes Rainer ★ 1.9k
0
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0
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310
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
23 months ago • updated 19 months ago whduke • 0
0
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0
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1.4k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
4.0 years ago • updated 19 months ago Luo Weijun ★ 1.5k
1
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0
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334
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
2.1 years ago Fred Hutch (Recruiting) ▴ 40
3
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0
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1.6k
views
Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
2.6 years ago • updated 2.5 years ago Gordon Smyth 45k
0
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0
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875
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
3.4 years ago • updated 2.6 years ago Luo Weijun ★ 1.5k
0
votes
1
reply
238
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
2.6 years ago A • 0
0
votes
1
reply
301
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 2.7 years ago by 37k • written 2.7 years ago by • 0
2
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2
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852
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 10
0
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0
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443
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
2.8 years ago tatabox • 0
3
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3
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558
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 3.1 years ago by 37k • written 3.1 years ago by • 0
0
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1
reply
462
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
3.4 years ago naglemi ▴ 10
0
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0
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342
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package for mismatch distribution?
genetics statistics
3.4 years ago myriam.croze07 • 0
0
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4
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1.3k
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 3.5 years ago by 37k • written 3.5 years ago by • 0
1
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2
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497
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Newbie to all of this
bioconductor statistics
3.7 years ago sportwoo • 0
8
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8
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3.7k
views
Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 3.8 years ago by 7.8k • written 3.8 years ago by ▴ 50
1
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2
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482
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 3.8 years ago by 60k • written 3.8 years ago by • 0
1
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4
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661
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
3.8 years ago Andrea Carenzo • 0
0
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2
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548
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comparing two GOstats result lists
gostats statistics
updated 4.1 years ago by 60k • written 4.1 years ago by ▴ 20
1
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0
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624
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Job: Statistical Research Associate
biostatistics statistics sas git assay Job
4.2 years ago Fred Hutch (Recruiting) ▴ 40
0
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0
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573
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
4.2 years ago floriandeckert ▴ 30
0
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0
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594
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
4.2 years ago kieranrcampbell ▴ 50
0
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0
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587
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Two questions about pathifier package
pathways statistics microarray
4.5 years ago arronar • 0
14
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6
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5.9k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 4.7 years ago by 60k • written 4.7 years ago by ▴ 20
2
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4
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633
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 4.7 years ago by 13k • written 4.7 years ago by ▴ 70
0
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0
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688
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Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
4.7 years ago rbronste ▴ 60
0
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0
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978
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
5.4 years ago • updated 5.2 years ago Luo Weijun ★ 1.5k
1
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2
replies
1.5k
views
how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 5.3 years ago by • 0 • written 7.3 years ago by ▴ 80
0
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0
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832
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Job: Bioinformaticist, Research Programmer
R genomics statistics Job
5.3 years ago radel • 0
1
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2
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2.1k
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the statistical test that DESeq2 use
deseq2 statistics
updated 5.4 years ago by 7.8k • written 5.4 years ago by • 0
2
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2
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4.9k
views
edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edgeR bioconductor fdr statistics differential gene expression
5.5 years ago jol.espinoz ▴ 40
1
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0
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1.1k
views
Job: PhD Positions in Computational Cancer Research
computational biology image analysis cancer genomics statistics Job
5.6 years ago Bernd Fischer ▴ 550
0
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0
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762
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Job: Seeking computational biologists with expertise in RNA-Seq and/or statistics at Immuneering Corporation, Cambridge MA and New York NY
rna-seq CNS Neurodegeneration statistics computational biology Job
5.7 years ago mmartin ▴ 20
0
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0
replies
824
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Job: Postdoc in Biostatistics/Bioinformatics at UNC Charlotte, NC, USA
genetics/genomics omics data statistics development R Job
5.9 years ago • updated 5.8 years ago Luo Weijun ★ 1.5k
0
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0
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1.4k
views
News: Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
workshop statistics single-cell News
5.8 years ago Wolfgang Huber 13k
0
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0
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1.4k
views
Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
6.2 years ago • updated 5.9 years ago clif.duhn • 0
0
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4
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4.2k
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10 multiple comparisons in DESeq2
deseq2 rnaseq statistics
updated 6.0 years ago by 37k • written 6.0 years ago by • 0
2
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3
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965
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RNAseq outlier is a critical sample
rnaseq outlier statistics batch effect
updated 6.1 years ago by 45k • written 6.1 years ago by • 0
2
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1
reply
642
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limma for gene expression analysis with big and unbalanced sample size
limma microarray statistics
updated 6.1 years ago by ★ 27k • written 6.1 years ago by • 0
8
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3
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2.2k
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Differing topTable() results with Limma with and without specifying coefficient
limma microarray statistics
updated 6.2 years ago by 45k • written 6.2 years ago by • 0
50 results • Page 1 of 1
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Answer: Using queryMany() in mygene package: Problem of querying Entrez gene IDs based o by Guido Hooiveld ★ 3.3k
I am not familiar with the package `mygene`, but please note that unigene has been retired 3 years ago! https://ncbiinsights.ncbi.nlm.nih.g…
Answer: GC content by Robert Castelo ★ 2.9k
hi, The help page of `getGeneLengthAndGCContent()` says that this function "Automatically retrieves gene length and GC-content informati…
Comment: Finding differentially expressed genes in a prospective cohort study by YC • 0
Thank you for your explanation and clarification. So, if I understand right, the purpose of building linear models in LIMMA is to find diff…
Comment: I got error message about DESeqDataSetFromMatrix by Md. Faridul • 0
I run the library(DESeq2) then got error message. I am new in r. How to solve this error. Error: package or namespace load failed for ‘DES…
Comment: I got error message about DESeqDataSetFromMatrix by Md. Faridul • 0
Yes , I did.
Votes
C: Converting numeric variables to factors in DESeq metadata
C: Converting numeric variables to factors in DESeq metadata
Comment: miRNA differential expression analysis - treat as transcript level?
At least one covariate is confounded with batch! Please remove confounded covariates and rerun ComBat
Comment: RSEM - tximport; where is effective_length information used? Implications for sc
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