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5
votes
25
replies
1.0k
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limma models out of memory issue on Slurm HPC
Regression limma STATISITICS HPC
updated 7 weeks ago by 50k • written 9 weeks ago by ▴ 10
0
votes
4
replies
401
views
limma with interaction term
R biostatistics limma Epigenetics
3 months ago Jitendra ▴ 10
1
vote
4
replies
471
views
limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
updated 3 months ago by 50k • written 3 months ago by ▴ 10
0
votes
0
replies
262
views
multipollutant models
statistics Regression r limma
6 months ago Jitendra ▴ 10
0
votes
5
replies
629
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 7 months ago by 66k • written 7 months ago by ▴ 10
3
votes
4
replies
937
views
DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
8 months ago Jitendra ▴ 10
1
vote
1
reply
375
views
Further analysis after limma regression output
statistics Epigenetics limma
updated 8 months ago by 66k • written 8 months ago by ▴ 10
5
votes
5
replies
842
views
limma output for epic array methylation data
linearregression epicarray MethylationArray limma
9 months ago Jitendra ▴ 10
0
votes
3
replies
1.0k
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 12 months ago by ▴ 780 • written 12 months ago by ▴ 10
0
votes
0
replies
501
views
combat for batch effect correction in EPIC array data
Epigenetics combat EPIC
14 months ago Jitendra ▴ 10
0
votes
0
replies
586
views
How to find regulatory region position and associated genes for CpG sites
Epigenetics R Bioconducter
15 months ago Jitendra ▴ 10
0
votes
17
replies
1.7k
views
How to check linear model
modalmatrix limma R linear
15 months ago Jitendra ▴ 10
0
votes
3
replies
1.0k
views
batch effect in EPIC array data
statistics Epigenetics R
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 10
0
votes
0
replies
442
views
rnbeads inference
epigenetics RnBeads
16 months ago Jitendra ▴ 10
0
votes
2
replies
893
views
ggplot2 bar plot
R Visualization ggplot2
19 months ago Jitendra ▴ 10
0
votes
6
replies
1.3k
views
regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
2.0 years ago Jitendra ▴ 10
0
votes
0
replies
580
views
normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
2.2 years ago Jitendra ▴ 10
0
votes
0
replies
750
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.2 years ago Jitendra ▴ 10
4
votes
8
replies
2.2k
views
R package installation error
HPC R Bioconducter
2.2 years ago Jitendra ▴ 10
0
votes
8
replies
1.9k
views
error in RnBeads installation
Epigenetics RnBeads R
2.2 years ago Jitendra ▴ 10
0
votes
3
replies
1.5k
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 2.3 years ago by 21k • written 2.4 years ago by ▴ 10
3
votes
16
replies
4.6k
views
How to add pseudocount to DESeq2 dds object
deseq2 r
updated 2.6 years ago by ▴ 10 • written 3.7 years ago by ▴ 10
0
votes
4
replies
517
views
How to mention control by using contrast command in DESeq2
DESeq2
3.7 years ago Jitendra ▴ 10
1
vote
2
replies
908
views
GOSeq analysis in rice
goseq
3.9 years ago • updated 3.8 years ago Jitendra ▴ 10
0
votes
1
reply
6.8k
views
How to make PCA plot using DESeq2 for a group design
deseq2
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by ▴ 10
0
votes
1
reply
559
views
LFC shrinkage Normal_vs_apeglm
deseq2
updated 4.3 years ago by 42k • written 4.3 years ago by ▴ 10
0
votes
5
replies
742
views
deseq2 differential gene expression and fold change
deseq2
4.4 years ago Jitendra ▴ 10
1
vote
3
replies
781
views
deseq2 formula design
deseq2
updated 4.8 years ago by ★ 1.4k • written 4.8 years ago by ▴ 10
0
votes
0
replies
709
views
taxonomy download from NCBI based on geneID
biomartr Bioconducter
4.8 years ago Jitendra ▴ 10
0
votes
1
reply
747
views
vegdist for beta diversity
vegan
4.9 years ago Jitendra ▴ 10
0
votes
3
replies
1.2k
views
phyloseq to edgeR
edger
updated 5.0 years ago by 50k • written 5.0 years ago by ▴ 10
0
votes
10
replies
1.9k
views
Phyloseq to metagenomeSeq
limma metagenomeSeq
5.0 years ago Jitendra ▴ 10
0
votes
1
reply
571
views
Phylpseq to deseq2
deseq2
updated 5.0 years ago by 42k • written 5.0 years ago by ▴ 10
0
votes
5
replies
936
views
DESeq not showing all coefficient
deseq2
updated 5.0 years ago by 42k • written 5.0 years ago by ▴ 10
0
votes
2
replies
2.0k
views
no gene names in deseq2 result file
deseq2
updated 5.1 years ago by 42k • written 5.1 years ago by ▴ 10
0
votes
15
replies
2.8k
views
Phyloseq to deseq2
deseq2
updated 5.2 years ago by 42k • written 5.2 years ago by ▴ 10
0
votes
4
replies
875
views
Dendogram from read count to show correlation between biological replicate and samples
bioconductor
updated 7.0 years ago by 66k • written 7.0 years ago by ▴ 10
1
vote
9
replies
1.4k
views
DESeq2 differential gene expression with multiple development stage and tissues
deseq2
updated 7.0 years ago by 42k • written 7.0 years ago by ▴ 10
1
vote
1
reply
1.1k
views
error in DESeq installationm
software error
updated 7.6 years ago by 66k • written 7.6 years ago by ▴ 10
0
votes
1
reply
563
views
How to prepre sample condition and sample info
deseq2
updated 7.6 years ago by 42k • written 7.6 years ago by ▴ 10
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