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2
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Additional high-scoring subnetworks in BioNet
bionet network
updated 8.5 years ago by ▴ 120 • written 8.5 years ago by ▴ 660
0
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1
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1.5k
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Comment: C: Clarification on DESeq2 normalizationFactors(), estimateDispersions() and varian
8.6 years ago enricoferrero ▴ 660
6
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4
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1.5k
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Clarification on DESeq2 normalizationFactors(), estimateDispersions() and varianceStabilizingTransformation()
deseq2
updated 8.6 years ago by 43k • written 8.6 years ago by ▴ 660
0
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0
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2.4k
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Comment: C: Shifted dashed frame in Gviz boxplot
8.6 years ago enricoferrero ▴ 660
3
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10
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2.4k
views
Shifted dashed frame in Gviz boxplot
gviz boxplot
updated 8.6 years ago by ★ 1.6k • written 8.7 years ago by ▴ 660
0
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0
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2.4k
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Comment: C: Shifted dashed frame in Gviz boxplot
8.6 years ago enricoferrero ▴ 660
0
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0
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7.2k
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Comment: C: Can't upgrade to Bioconductor 3.3?
8.6 years ago enricoferrero ▴ 660
8
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4
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7.2k
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Can't upgrade to Bioconductor 3.3?
bioconductor biocupgrade upgrade update bioclite
8.6 years ago enricoferrero ▴ 660
0
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0
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5.5k
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Comment: C: How to correctly import Bismark coverage files into bsseq?
8.6 years ago enricoferrero ▴ 660
0
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0
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2.4k
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Comment: C: Shifted dashed frame in Gviz boxplot
8.7 years ago enricoferrero ▴ 660
2
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0
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3.8k
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Answer: A: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
8.7 years ago enricoferrero ▴ 660
7
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4
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3.8k
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PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation
8.7 years ago enricoferrero ▴ 660
1
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1
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3.8k
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Comment: C: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
8.7 years ago enricoferrero ▴ 660
0
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0
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2.4k
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Comment: C: Remove grouping dashed line in Gviz boxplot
8.7 years ago enricoferrero ▴ 660
0
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0
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2.4k
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Comment: C: Remove grouping dashed line in Gviz boxplot
8.7 years ago enricoferrero ▴ 660
0
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0
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2.4k
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Comment: C: Remove grouping dashed line in Gviz boxplot
8.7 years ago enricoferrero ▴ 660
0
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0
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1.3k
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Comment: C: Package Gviz: boxplot question
8.7 years ago enricoferrero ▴ 660
0
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0
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4.1k
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Comment: C: t-statistic cutoff for finding DMRs with bsseq
8.7 years ago enricoferrero ▴ 660
0
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1
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2.9k
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Comment: C: Plotting genomic interactions in Gviz
8.7 years ago enricoferrero ▴ 660
5
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4
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2.9k
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Plotting genomic interactions in Gviz
gviz genomicinteractions
8.7 years ago enricoferrero ▴ 660
0
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0
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2.9k
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Comment: C: Plotting genomic interactions in Gviz
8.7 years ago enricoferrero ▴ 660
0
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0
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2.2k
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Comment: C: Why does Homo.sapiens import TxDb.Hsapiens.UCSC.hg19.knownGene instead of TxDb.H
8.7 years ago enricoferrero ▴ 660
0
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0
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2.2k
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Comment: C: Why does Homo.sapiens import TxDb.Hsapiens.UCSC.hg19.knownGene instead of TxDb.H
8.7 years ago enricoferrero ▴ 660
4
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4
replies
2.2k
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Why does Homo.sapiens import TxDb.Hsapiens.UCSC.hg19.knownGene instead of TxDb.Hsapiens.UCSC.hg38.knownGene?
homo.sapiens txdb annotation
updated 8.7 years ago by ★ 6.8k • written 8.7 years ago by ▴ 660
0
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0
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2.1k
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Comment: C: bsseq BSmooth error
8.7 years ago enricoferrero ▴ 660
0
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1
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2.1k
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Comment: C: bsseq BSmooth error
8.7 years ago enricoferrero ▴ 660
1
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3
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2.1k
views
bsseq BSmooth error
bsseq
8.7 years ago enricoferrero ▴ 660
0
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0
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1.5k
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Comment: C: [gwascat] makeCurrentGwascat() fails
8.7 years ago enricoferrero ▴ 660
1
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2
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1.5k
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[gwascat] makeCurrentGwascat() fails
gwascat
8.7 years ago enricoferrero ▴ 660
0
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0
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1.4k
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Import motifs in .meme format in MotifDB
motfdb pwmenrich meme
8.8 years ago enricoferrero ▴ 660
0
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0
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4.1k
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Comment: C: t-statistic cutoff for finding DMRs with bsseq
8.8 years ago enricoferrero ▴ 660
0
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1
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4.1k
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Comment: C: t-statistic cutoff for finding DMRs with bsseq
8.8 years ago enricoferrero ▴ 660
0
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0
replies
4.1k
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Comment: C: t-statistic cutoff for finding DMRs with bsseq
8.9 years ago enricoferrero ▴ 660
1
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0
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4.1k
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Comment: C: t-statistic cutoff for finding DMRs with bsseq
8.9 years ago enricoferrero ▴ 660
0
votes
1
reply
4.1k
views
Comment: C: t-statistic cutoff for finding DMRs with bsseq
8.9 years ago enricoferrero ▴ 660
7
votes
11
replies
4.1k
views
t-statistic cutoff for finding DMRs with bsseq
bsseq dmr ttest pvalue
updated 8.9 years ago by 67k • written 8.9 years ago by ▴ 660
0
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1
reply
3.1k
views
Comment: C: DESeq2 rlog error
8.9 years ago enricoferrero ▴ 660
1
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0
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1.8k
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Multiple linear regression model for DMR detection?
methylation linear model dmr bsseq biseq
9.0 years ago enricoferrero ▴ 660
0
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0
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5.5k
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Comment: C: How to correctly import Bismark coverage files into bsseq?
9.0 years ago enricoferrero ▴ 660
1
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0
replies
5.5k
views
Answer: A: How to correctly import Bismark coverage files into bsseq?
9.0 years ago enricoferrero ▴ 660
6
votes
14
replies
5.5k
views
How to correctly import Bismark coverage files into bsseq?
bsseq bismark methylation
9.0 years ago enricoferrero ▴ 660
0
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0
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5.5k
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Comment: C: How to correctly import Bismark coverage files into bsseq?
9.0 years ago enricoferrero ▴ 660
0
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2
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5.5k
views
Comment: C: How to correctly import Bismark coverage files into bsseq?
9.0 years ago enricoferrero ▴ 660
0
votes
0
replies
5.5k
views
Comment: C: How to correctly import Bismark coverage files into bsseq?
9.0 years ago enricoferrero ▴ 660
0
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1
reply
5.5k
views
Comment: C: How to correctly import Bismark coverage files into bsseq?
9.0 years ago enricoferrero ▴ 660
0
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1
reply
3.0k
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Comment: C: Reactome pathway names from IDs?
9.1 years ago enricoferrero ▴ 660
5
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6
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3.0k
views
Reactome pathway names from IDs?
biomart reactome reactome.db id
updated 9.1 years ago by 67k • written 9.1 years ago by ▴ 660
19
votes
4
replies
5.9k
views
biomaRt no longer works with proxy after upgrade
biomart proxy rcurl
updated 9.1 years ago by ▴ 140 • written 9.1 years ago by ▴ 660
0
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0
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2.8k
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Comment: C: BS-seq differential methylation analysis using continuous variable
9.2 years ago enricoferrero ▴ 660
1
vote
2
replies
2.8k
views
BS-seq differential methylation analysis using continuous variable
dmr methylation deseq2 bsseq biseq
updated 9.2 years ago by ★ 6.5k • written 9.2 years ago by ▴ 660
150 results • Page 2 of 3
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