Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
questions
9
votes
38
replies
6.8k
views
manipulate bedpe format files
GRanges
bedpe
structural variants
rtracklayer
written 8.2 years ago by
tangming2005
▴ 190
0
votes
2
replies
538
views
TCGA counts to TPM from recount3 do not seem to right
recount3
TCGA
RNASeq
updated 6 months ago by
Leonardo Collado Torres
★ 1.0k • written 6 months ago by
tangming2005
▴ 190
3
votes
2
replies
1.2k
views
BiocParallel errors from muscat
BiocParallel
muscat
single-cell
2.1 years ago
tangming2005
▴ 190
0
votes
2
replies
1.2k
views
calculating TSS enrichment from ATACseq data
GenomicRanges
Views
ATACseq
TSS
5.0 years ago
tangming2005
▴ 190
32
votes
16
replies
18k
views
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
tximport
deseq2
TPM
RPKM
rnaseq
updated 6.0 years ago by
luxeredias
▴ 20 • written 7.8 years ago by
tangming2005
▴ 190
2
votes
2
replies
1.7k
views
claariom.s.human annotation error
affcoretools
pd.clariom.s.human
updated 6.5 years ago by
James W. MacDonald
65k • written 6.5 years ago by
tangming2005
▴ 190
6
votes
4
replies
2.0k
views
unlist a exons GRangeslist object and add a gene name column
granges
grangeslist
txdb.hsapiens.ucsc.hg19.knowngene
updated 6.5 years ago by
Hervé Pagès
16k • written 6.5 years ago by
tangming2005
▴ 190
3
votes
10
replies
1.8k
views
POU5F1(OCT4) /ENTREZID: 5460 is not in the TxDb.Hsapiens.UCSC.hg19.knownGene
txdb.hsapiens.ucsc.hg19.knowngene
updated 6.6 years ago by
jma1991
▴ 70 • written 6.6 years ago by
tangming2005
▴ 190
0
votes
6
replies
2.4k
views
reads2pairs from TEQC error:Error in reads2pairs(reads) : read pair IDs do not seem to be unique
TEQC
6.8 years ago • updated 6.7 years ago
tangming2005
▴ 190
26
votes
22
replies
18k
views
DESeq2 for ChIP-seq differential peaks
deseq2
deseq
chipseq
updated 6.8 years ago by
k.vitting.seerup
▴ 120 • written 8.7 years ago by
tangming2005
▴ 190
4
votes
20
replies
3.1k
views
TCGAbiolinks Error in gene.location$ensembl_gene_id : $ operator is invalid for atomic vectors
tcgabiolinks
updated 7.1 years ago by
Mike Smith
★ 6.5k • written 7.1 years ago by
tangming2005
▴ 190
0
votes
3
replies
1.9k
views
TCGAbiolinks maf files RAS mutation rate not matching maf files from firehose
TCGAbiolinks
7.2 years ago
tangming2005
▴ 190
2
votes
6
replies
2.9k
views
TxDb.Hsapiens.UCSC.hg19.knownGene misannotation of a gene
txdb.hsapiens.ucsc.hg19.knowngene
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
tangming2005
▴ 190
1
vote
3
replies
1.2k
views
DiffBind Error when dba.count on a pre-defined peak set
diffbind
chipseq
updated 7.6 years ago by
Rory Stark
★ 5.2k • written 7.6 years ago by
tangming2005
▴ 190
0
votes
7
replies
1.8k
views
TCGAbiolinks not downloading the 450k data
tcgabiolinks
updated 7.6 years ago by
Tiago Chedraoui Silva
▴ 260 • written 7.6 years ago by
tangming2005
▴ 190
0
votes
4
replies
1.6k
views
load methylKit segfault error
methylKit
bioconductor
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
tangming2005
▴ 190
2
votes
1
reply
1.0k
views
cluster (only one end overlapping) breakpoints using InteractionSet
InteractionSet
structural variants
updated 7.8 years ago by
Aaron Lun
★ 28k • written 7.8 years ago by
tangming2005
▴ 190
1
vote
1
reply
1.4k
views
install IlluminaHumanMethylation450k.db error
illuminahumanmethylation450k.db
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
tangming2005
▴ 190
1
vote
4
replies
1.2k
views
rtrackylayer import bedpe error
rtracklayer
updated 8.0 years ago by
Michael Lawrence
★ 11k • written 8.0 years ago by
tangming2005
▴ 190
0
votes
2
replies
1.1k
views
GenomicInteractions read in bedpe error
genomicinteractions
GRanges
updated 8.2 years ago by
liz.ingsimmons
▴ 140 • written 8.2 years ago by
tangming2005
▴ 190
1
vote
4
replies
1.7k
views
GenomicFeatures makeTranscriptDbFromBiomart 'chrominfo' data frame ... FAILED!
genomicfeatures
updated 8.3 years ago by
Hervé Pagès
16k • written 8.3 years ago by
tangming2005
▴ 190
1
vote
4
replies
4.3k
views
How to bin a GRanges to small bins
GenomicRanges
updated 8.3 years ago by
Michael Lawrence
★ 11k • written 8.3 years ago by
tangming2005
▴ 190
9
votes
21
replies
11k
views
annotate GRanges with upstream or downstream nearest gene
GRange
genomicranges
genomicfeatures
updated 8.3 years ago by
Ou, Jianhong
★ 1.3k • written 8.3 years ago by
tangming2005
▴ 190
3
votes
5
replies
2.0k
views
GenomicInteractions package read in meta data file
GenomicInteractions
updated 8.3 years ago by
Malcolm Perry
▴ 40 • written 8.4 years ago by
tangming2005
▴ 190
0
votes
3
replies
1.6k
views
gviz library plot 2 gene loci in the same figure
gviz
updated 8.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.7 years ago by
tangming2005
▴ 190
3
votes
4
replies
3.3k
views
Gviz GeneRegionTrack draw only one gene in the range
Gviz
updated 8.7 years ago by
Robert Ivanek
▴ 730 • written 8.7 years ago by
tangming2005
▴ 190
2
votes
6
replies
2.8k
views
IdeogramTrack from Gviz with chromosome name "4" rather "chr4"
Gviz
updated 8.7 years ago by
Robert Ivanek
▴ 730 • written 8.7 years ago by
tangming2005
▴ 190
27 results • Page
1 of 1
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6