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25
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ERROR; return code from pthread_create() is 22
affy
21 hours ago • updated 1 hour ago
pickingastar
• 0
0
votes
0
replies
93
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
12 days ago
Dinesh
• 0
0
votes
0
replies
49
views
ReactomeGSA for RNASeq
ReactomeGSA
BatchEffect
RNASeqData
2 days ago
Shaimaa Gamal
• 0
4
votes
0
replies
142
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
17 days ago
shepherl
3.9k
0
votes
0
replies
49
views
determine k during RUVSeq
RUVSeq
RUVnormalize
2 days ago
Ειρήνη
• 0
0
votes
0
replies
6
views
all variables in design formula must be columns in colData (Deseq2) error
BatchQC
batchinDeseq2.
columnsincolData.
45 minutes ago
Galina
• 0
0
votes
0
replies
143
views
One error problem occurred caused by data type during using GDCprepare function of TCGAbiolinks to handle TCGAbiolinks BRCA data
GDCRNATools
TCGA
24 days ago • updated 16 days ago
glaciya2018
• 0
0
votes
0
replies
14
views
Spam:
Unveiling Unmatched Best Custom Patches
SIMAT
2 days ago
oliverelijhan
0
0
votes
0
replies
140
views
Empty table plot using plotGseaTable()
fgsea
17 days ago • updated 15 days ago
Chris
▴ 10
0
votes
0
replies
120
views
dba.plotProfile() plotting and interpretation
DiffBind
15 days ago
Henry
▴ 10
1
vote
0
replies
59
views
News:
Ensembl 112 has been released.
ensembldb
biomaRt
ensemblrelease
5 days ago
Aleena
▴ 30
0
votes
0
replies
73
views
Treeio as.treedata function seq lenght error
treeio
11 days ago
nromerov
• 0
0
votes
0
replies
32
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets
allele_freq
biomaRt
getBM
1 day ago • updated 1 hour ago
Abiologist
• 0
0
votes
0
replies
95
views
Unlocking Potential: NURS FPX Strategies and Insights
levi
NURSFPX
ragene20sttranscriptcluster.db
ssrch
28 days ago
vaxahey107
• 0
0
votes
0
replies
43
views
GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO
KEGG
gage
pathview
3 days ago
danalvoronov
▴ 10
0
votes
0
replies
52
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
5 days ago
Researcher
• 0
0
votes
0
replies
85
views
News:
Interested in the analysis of Spatial Omics data?
tidySpatialExperiment
SpatialExperiment
MoleculeExperiment
25 days ago
info
▴ 10
1
vote
0
replies
352
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor
Install
29 days ago
BioinfGuru
▴ 30
1
vote
0
replies
327
views
News:
Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition
Awards
Bioconductor
Bioc204
8 weeks ago • updated 4 days ago
shepherl
3.9k
0
votes
0
replies
87
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
16 days ago
Ian D.
▴ 70
0
votes
0
replies
97
views
Exon-exon Junction Analysis for Variable-length Exons
Rsubread
24 days ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
99
views
how to do Differential splicing from SGSeq analysis
DEXSeq
SGSeq
24 days ago • updated 20 days ago
Sara
• 0
0
votes
0
replies
95
views
Could we detect difference at pathway level but not significant different at gene level?
GSVA
19 days ago
Chris
▴ 10
0
votes
0
replies
38
views
query regarding how to apply WGCNA on replicates
replicatesRNAseq
WGCNA
3 days ago
k200987
• 0
0
votes
0
replies
94
views
News:
BioC2024 deadlines approaching
BioC2024
Bioconductor
Community
18 days ago
Maria Doyle
▴ 70
175 results • Page
4 of 4
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Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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Dario Strbenac
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Vincent J. Carey, Jr.
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Koen Van den Berge
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shepherl
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