Showing : AffymetrixChip • reset
2
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491
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Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 10 months ago by 68k • written 10 months ago by • 0
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358
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Remove Control Probes from Affymetrix Human Gene 1.0 ST Array probeset version
AffymetrixDataTestFiles AffymetrixChip
15 months ago drexjaramel • 0
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4
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1.0k
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Unable to annotate ExpressionSet object from hugene11st chip
oligo limma hugene11stprobeset.db AffymetrixChip
18 months ago Efra • 0
0
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1
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1.1k
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Affymetrix hgu133plus2.db: How to best derive an expression value for genes that map to multiple probe ids
affydata hgu133plus2.db AffymetrixChip
updated 2.2 years ago by ★ 5.0k • written 2.2 years ago by ▴ 20
1
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2
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1.0k
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Affymetrix analysis Chiptype hgu133plus2hsentrezg.db vs hgu133plus2.db
hgu133plus2hsentrezg.db chiptype chipster hgu133plus2.db AffymetrixChip
2.3 years ago alexia.brunel • 0
1
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4
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1.3k
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How to annotate mir4.1 arrays?
AffymetrixChip miRNA oligo
2.4 years ago • updated 2.2 years ago richardallenfriedmanbrooklyn ▴ 30
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0
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938
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Volcano plot
limma AffymetrixChip
2.4 years ago e.gunaut • 0
2
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2
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1.2k
views
Question about transforming log expression values to antilog values in limma
IlluminaChip limma AffymetrixChip Normalization Microarray
2.5 years ago Abdul ▴ 20
1
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1
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1.3k
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Strange error with RMA during Affymetrix data analysis
AffymetrixChip RMA
updated 2.9 years ago by ★ 6.6k • written 2.9 years ago by ▴ 20
2
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2
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990
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2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
3.0 years ago evan.j.williams ▴ 10
2
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2
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1.3k
views
How to compute P/A calls at gene-level probeset of Human Gene 1.0 ST Array
pd.hugene.1.0.st.v1 oligo AffymetrixChip
3.3 years ago Yang Shi ▴ 10
2
votes
5
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1.7k
views
Equivalence between PSDABG and Logarithmic Intensity Error (PLIER) Estimation
pd.hugene.1.0.st.v1 oligo AffymetrixChip
3.3 years ago Yang Shi ▴ 10
2
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4
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1.7k
views
Robust Multi-array Average could get negative value or not?
pd.hg.u219 oligo AffymetrixChip
3.4 years ago Yang Shi ▴ 10
4
votes
10
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2.9k
views
Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
pd.hg.u219 Microarray oligo AffymetrixChip
3.4 years ago Yang Shi ▴ 10
0
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2
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1.2k
views
How to extract probe level intensity after rma() normalization
MicroarrayData AffymetrixChip
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
0
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4
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1.3k
views
getProbeInfo and exprs return two different dimensions
CELfile MicroarrayData AffymetrixChip
3.5 years ago Haoran • 0
2
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2
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1.4k
views
Subscript out of bounds while normalising using affy::rma()
Normalization affy AffymetrixChip
4.4 years ago geoffrey ▴ 10
0
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1
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1.3k
views
Microarray: Build annotation for HT MG430PM affymetrix
AffymetrixChip Microarray affymetrix
updated 4.5 years ago by ★ 4.1k • written 4.5 years ago by • 0
3
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2
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1.9k
views
Trouble getting probe ID info from mouse4302.db annotation package with a specific RefSeq ID.
annotationdbi mouse4302 affymetrixchip annotationdata R
updated 9.9 years ago by 68k • written 9.9 years ago by • 0
0
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4
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2.7k
views
HUgene 2.0 analyses heatmap
hugene20 heatmap affymetrixchip
updated 10.4 years ago by ▴ 130 • written 10.4 years ago by ▴ 10
2
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5
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3.5k
views
miRNA expression analysis : annotation
miRNA annotation affymetrixchip
10.5 years ago aswathym ▴ 10
0
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0
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1.5k
views
Correst use of GeneOverlap R Package
GeneOverlap DEGgenes affymetrixchip bioconductor
10.5 years ago svlachavas ▴ 840
1
vote
3
replies
1.9k
views
BioNet package network analysis important questions for tutorial
BioNet bioconductor affymetrixchip network analysis
10.6 years ago svlachavas ▴ 840
5
votes
9
replies
4.2k
views
Merge different datasets regarding a common number of DE genes in R
bioconductor expresiondataset affymetrixchip differential gene expression
10.6 years ago svlachavas ▴ 840
1
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4
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4.0k
views
GeneChip Human Transcriptome Array 2.0 analysis in R for identifying possible differential exon splicing events
affymetrixchip GenechipHumanTranscriptomeArray2.0 exon array analysis
10.6 years ago svlachavas ▴ 840
3
votes
11
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4.2k
views
Filtering on present/absent calls methodology and perfect match only arrays
bioconductor mas5 perfectmatch affymetrixchip filter
updated 10.6 years ago by 68k • written 10.6 years ago by ▴ 840
0
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0
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2.6k
views
MAplot: Binning grid too coarse for current (small) bandwidth
affy affymetrix affymetrics affymetrixchip
10.7 years ago neverstop • 0
0
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1
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2.2k
views
Having trouble with new brainarray CDF
Microarray Annotation AnnotationData AffymetrixChip hgu133a2 cdf probe graph AnnotationDbi
updated 14.4 years ago by ★ 7.2k • written 14.4 years ago by ▴ 100
28 results • Page 1 of 1
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Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Results with PON give more variants by ejafgdf4.ge.r.m • 0
It s common to expect Mutect2 with a PON to be a strict subset of Mutect2 without it but seeing unique variants in Mutect2withPON isn t unu…
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Comment: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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