Showing : Anova • reset
2
votes
2
replies
247
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2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
7 months ago evan.j.williams ▴ 10
3
votes
4
replies
873
views
Pipeline for an Anova-like analysis in edgeR
edgeR anova rna-seq
2.1 years ago Antonio M. • 0
2
votes
3
replies
695
views
ANOVA Limma
ANOVA limma
updated 2.3 years ago by 63k • written 2.3 years ago by ▴ 10
1
vote
1
reply
539
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DESeq2 interactions genotype condition code needed
DESeq2 anova condition genotypeeval
updated 2.4 years ago by ★ 2.9k • written 2.4 years ago by ▴ 20
2
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4
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1.7k
views
Compare 3 RNASeq groups with no control in DESeq2
anova RNASeqData tukeyTest DESeq2
2.5 years ago ecg1g15 ▴ 20
5
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13
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1.8k
views
DESeq2 multiple group comparison (ANOVA) with batch effect
DESeq2 DEG ANOVA Batch effect Comparison
updated 3.8 years ago by 40k • written 3.8 years ago by • 0
3
votes
3
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1.4k
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Differential Expression Analysis in edgeR using Anova
edger anova gene expression Dispersion
updated 3.9 years ago by • 0 • written 4.4 years ago by • 0
0
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1
reply
1.2k
views
edgeR 2-way ANOVA testing
edger ANOVA
updated 4.6 years ago by 47k • written 4.6 years ago by • 0
5
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6
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987
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nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma anova decidetests
updated 4.7 years ago by 47k • written 4.7 years ago by ▴ 270
3
votes
1
reply
835
views
ANOVA-like test via treat() in limma
limma anova
updated 4.8 years ago by 47k • written 4.8 years ago by ▴ 120
1
vote
1
reply
604
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Getting Significance for second factor (bioreplicate/subject) when using limma.
limma anova
updated 5.0 years ago by ★ 28k • written 5.0 years ago by ▴ 10
1
vote
1
reply
564
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How to calculate one way unpaired Anova test with multi column data in R
Anova
updated 5.2 years ago by 63k • written 5.2 years ago by • 0
1
vote
8
replies
1.0k
views
design versus interaction term similarities and/or differences?
deseq2 ANOVA design interaction term
updated 5.3 years ago by 40k • written 5.3 years ago by • 0
0
votes
3
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1.0k
views
Anova test on gene expression data
Anova gene expression
updated 5.5 years ago by 63k • written 5.5 years ago by • 0
2
votes
6
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1.6k
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Three way-interaction on voom (limma) data, including a factor with > 2 levels
RNASeq limma voom anova
updated 15 months ago by ▴ 90 • written 5.9 years ago by ▴ 70
2
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2
replies
1.8k
views
EdgeR -ANOVA-like test vs testing individual contrasts
EdgeR ANOVA t-test contrast
updated 5.9 years ago by ★ 28k • written 5.9 years ago by • 0
0
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6
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3.7k
views
How to perform ANOVA to calculate differential gene expression with three categories
anova
updated 5.9 years ago by 47k • written 5.9 years ago by ▴ 50
2
votes
3
replies
1.8k
views
edgeR ANOVA-like analysis
edger rnaseq anova
updated 6.2 years ago by ★ 28k • written 6.2 years ago by • 0
1
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4
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1.0k
views
DESeq2 ANOVADEV giving strange result
deseq2 anova
updated 6.6 years ago by 40k • written 6.6 years ago by ▴ 10
3
votes
3
replies
1.7k
views
Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma ANOVA topTable microarray
updated 6.7 years ago by 47k • written 6.7 years ago by ▴ 80
0
votes
5
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1.4k
views
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomeseq anova metagenomics
7.1 years ago David ▴ 860
3
votes
4
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1.4k
views
how to use edgeR analysis RNA-seq data with a obvious deviation sample
edger RNA-seq anova
updated 7.2 years ago by ★ 28k • written 7.2 years ago by • 0
2
votes
4
replies
1.2k
views
Complex ANOVA analysis in EdgeR
edger anova sequencing
updated 7.3 years ago by ★ 28k • written 7.3 years ago by • 0
2
votes
1
reply
3.1k
views
RNA-seq Differential expression using 3 groups
rnaseq anova deseq2 edger genespring
7.9 years ago BM • 0
3
votes
14
replies
3.5k
views
Moderated t-test in Anova
anova moderated t-test
updated 8.0 years ago by 47k • written 8.0 years ago by • 0
8
votes
4
replies
5.0k
views
Multiple Comparisons EdgeR
edger multiple comparisons anova glm
updated 8.0 years ago by 7.8k • written 8.0 years ago by ▴ 20
4
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2
replies
8.6k
views
DESeq2 LRT output help
deseq2 LRT anova
8.0 years ago rclaire ▴ 20
3
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1
reply
1.3k
views
edgeR: glmLRT equivalence between tests with cell means model and factor levels model
edger anova
updated 8.0 years ago by ★ 28k • written 8.0 years ago by • 0
2
votes
8
replies
3.1k
views
EdgeR. Analysis with pairing across condition and treatment. Design Matrix
edger ANOVA Design matrix
updated 8.3 years ago by 47k • written 8.3 years ago by • 0
3
votes
2
replies
2.1k
views
EdgeR User Guide. Analysis with multiple factors. Section 3.3.1
edger anova
updated 8.3 years ago by 47k • written 8.3 years ago by • 0
3
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3
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9.0k
views
DESeq2 One-way ANOVA with 3 sample groups?
deseq2 Anova
updated 18 months ago by 40k • written 8.7 years ago by ▴ 10
31 results • Page 1 of 1
Recent ...
Replies
Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10
Sure, noted.
Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10
@gordonsmyth Yes, I realized while re-running through the WGCNA workflow and forget to account for the paired experiment. For general gene …
Comment: Question on constructing design matrix and defining contrasts for analysis by Gordon Smyth 47k
PS. Just as aside, using `dput` to show a data.frame is unnecessary overkill. Just typing `targetsframe` at the prompt would do the job.
Comment: Question on constructing design matrix and defining contrasts for analysis by Gordon Smyth 47k
> Basically, I want to create a design matrix and binarize by 0 and 1 to be used in WGCNA analysis to compare module between/within groups …
Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl by ansleyharralson • 0
Any estimate on when DelayedArray 0.26.3 will be released for macOS Binary (arm64)? Latest is still 0.26.02 best I can tell.
Votes
WGCNA coupled with differential expression analysis: question about baseline module detection
WGCNA with paired samples
Comment: Question on constructing design matrix and defining contrasts for analysis
Comment: Question on constructing design matrix and defining contrasts for analysis
Answer: Question on constructing design matrix and defining contrasts for analysis
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