Bioconductor Atac

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6.1k

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 8.9 years ago by Gordon Smyth 50k • written 9.0 years ago by samuel collombet ▴ 140

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4.8k

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diffbind atac

6.9 years ago niu.shengyong • 0

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4.5k

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ATAC differential binding analysis no replicates DEseq2 chromatin

7.1 years ago BioinfGuru ▴ 30

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768

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deseq2 design formula design matrix edgeR ATAC

updated 4.4 years ago by Gordon Smyth 50k • written 4.4 years ago by corinne_hutfilz • 0

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1.3k

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diffbind ATACseq ATAC counts differential analysis

updated 5.1 years ago by Rory Stark ★ 5.2k • written 5.1 years ago by pgontarz ▴ 10

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2.9k

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subread featurecounts atac

updated 5.1 years ago by Wei Shi ★ 3.6k • written 5.1 years ago by aurel.nagy ▴ 10

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941

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Diffbind ATAC batch correction blocking factor

updated 4.7 years ago by Rory Stark ★ 5.2k • written 4.7 years ago by rm1238 • 0

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1.4k

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limma edger atac atac-seq

updated 4.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by pgugger ▴ 70

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550

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r DiffBind ATAC

updated 4.2 years ago by Rory Stark ★ 5.2k • written 4.2 years ago by lindsaynhayes • 0

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1.2k

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diffbind atac

updated 3.9 years ago by Rory Stark ★ 5.2k • written 3.9 years ago by lindsaynhayes • 0

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651

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ATAC DiffBind ATACSeq

updated 14 months ago by Rory Stark ★ 5.2k • written 15 months ago by Hadar • 0

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673

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rna-seq Read10X_h5 atac modalities

updated 13 months ago by James W. MacDonald 65k • written 13 months ago by Cynthia • 0

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2.8k

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atac-seq atac deseq2 sva combat

updated 7.2 years ago by Michael Love 41k • written 7.2 years ago by g.atla ▴ 10

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1.4k

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Diffbind Atac adapters

updated 7.1 years ago by Rory Stark ★ 5.2k • written 7.1 years ago by BioinfGuru ▴ 30

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2.2k

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diffbind atac

updated 5.2 years ago by Rory Stark ★ 5.2k • written 5.2 years ago by paz2005 • 0

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1.8k

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ATACseqQC ATAC ATACseq software error Tutorial

updated 4.9 years ago by Steve Lianoglou ★ 13k • written 4.9 years ago by mbasam • 0

16 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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