Bioconductor BiSeq

Showing : BiSeq • reset

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1.9k

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BiSeq readBismark

updated 8.5 years ago by James W. MacDonald 65k • written 8.5 years ago by Neel Aluru ▴ 460

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3.0k

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biseq fdr data results

9.1 years ago • updated 9.0 years ago mnaymik ▴ 10

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936

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biseq beta regression

3.9 years ago • updated 3.8 years ago akhaira • 0

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1.2k

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BiSeq DMR

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by akhaira • 0

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2.5k

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dmr methylation deseq2 bsseq biseq

updated 8.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.5 years ago by enricoferrero ▴ 660

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1.7k

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methylation linear model dmr bsseq biseq

8.4 years ago enricoferrero ▴ 660

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579

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BiSeq Coldata

3.9 years ago akhaira • 0

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933

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biseq package installation r

updated 5.3 years ago by Martin Morgan 25k • written 5.3 years ago by lwh863 • 0

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737

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BiSeq Wald test Beta regression

5.3 years ago mira • 0

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612

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biseq betaRegression RRBS Methylation

4.1 years ago i.s.castanho • 0

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645

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biseq R methylation

4.0 years ago AishaD • 0

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474

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Biseq

3.9 years ago akhaira • 0

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732

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BiSeq testClusters error dmr

3.8 years ago akhaira • 0

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923

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bedgraph .cov wig biseq coverage

3.8 years ago akhaira • 0

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752

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Biseq Methylation DMP DMR RRBS

3.8 years ago i.s.castanho • 0

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1.7k

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BiSeq BiSeq

updated 10.3 years ago by David Iles ▴ 130 • written 10.3 years ago by Hans-Ulrich Klein ▴ 330

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636

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BiSeq

2.2 years ago thomas.koefoed • 0

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2.0k

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biseq RRBS SAAP-BS coverage

9.0 years ago maria.maqueda • 0

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1.9k

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biseq error trimClusters

updated 8.2 years ago by Katja Hebestreit ▴ 130 • written 8.3 years ago by kms68 • 0

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1.3k

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biseq methylation dmr analysis

updated 7.3 years ago by Katja Hebestreit ▴ 130 • written 7.3 years ago by jjalmagro • 0

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1.1k

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biseq RRBS betaregression

7.1 years ago l.eijssen • 0

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1.1k

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dna methylation biseq

updated 6.4 years ago by Gordon Smyth 50k • written 6.4 years ago by ahmad.moousavi • 0

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907

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biseq ccle

5.7 years ago spr ▴ 10

23 results • Page 1 of 1

Recent ...

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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…

Answer: meffil.snp.concordance by James W. MacDonald 65k

This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…

Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

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