Showing : BiSeq • reset
2
votes
15
replies
3.7k
views
BiSeq trimClusters FDR.loc confusion
biseq fdr data results
9.9 years ago • updated 9.8 years ago mnaymik ▴ 10
0
votes
6
replies
2.2k
views
BiSeq trimClusters error
biseq error trimClusters
updated 9.1 years ago by ▴ 130 • written 9.2 years ago by • 0
0
votes
5
replies
2.4k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq RRBS SAAP-BS coverage
9.9 years ago maria.maqueda • 0
0
votes
3
replies
2.0k
views
BiSeq - readBismark error
BiSeq BiSeq
updated 11.1 years ago by ▴ 130 • written 11.1 years ago by ▴ 330
1
vote
2
replies
2.9k
views
BS-seq differential methylation analysis using continuous variable
dmr methylation deseq2 bsseq biseq
updated 9.4 years ago by ★ 6.5k • written 9.4 years ago by ▴ 680
4
votes
4
replies
2.2k
views
Unable to read data using readBismark in BiSeq
BiSeq readBismark
updated 9.4 years ago by 68k • written 9.4 years ago by ▴ 460
0
votes
3
replies
1.5k
views
BiSeq. Model beta regression on resampled data.
biseq methylation dmr analysis
updated 8.2 years ago by ▴ 130 • written 8.2 years ago by • 0
0
votes
1
reply
1.3k
views
Problem in working with BiSeq - BSraw
dna methylation biseq
updated 7.2 years ago by 52k • written 7.2 years ago by • 0
0
votes
1
reply
1.2k
views
Biseq installation error
biseq package installation r
updated 6.2 years ago by 25k • written 6.2 years ago by • 0
2
votes
10
replies
1.8k
views
How do you use the readBismark command in BiSeq properly?
BiSeq DMR
updated 4.8 years ago by 68k • written 4.8 years ago by • 0
0
votes
0
replies
1.1k
views
BiSeq: Read in Relative Methylation data from CCLE
biseq ccle
6.6 years ago spr ▴ 10
0
votes
0
replies
965
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq Methylation DMP DMR RRBS
4.7 years ago i.s.castanho • 0
0
votes
0
replies
950
views
Beta Regression model with wald test - BiSeq - which test is used?
BiSeq Wald test Beta regression
6.1 years ago mira • 0
0
votes
1
reply
823
views
BiSeq - betaResults output only contains chr1 and chr2
biseq betaRegression RRBS Methylation
5.0 years ago i.s.castanho • 0
0
votes
1
reply
877
views
Are the ordering of outputs of methylation matrix and coordinates from predictedMeth() the same?
biseq R methylation
4.8 years ago AishaD • 0
1
vote
0
replies
798
views
Understanding ColData in BiSeq
BiSeq Coldata
4.8 years ago akhaira • 0
0
votes
1
reply
881
views
Variogram-sill larger than 1, and negative p.li values in trimClusters-output
BiSeq
3.1 years ago thomas.koefoed • 0
0
votes
0
replies
639
views
What values to include for predictedMethNull in BiSeq
Biseq
4.7 years ago akhaira • 0
2
votes
8
replies
1.3k
views
Reason for NA in table after beta regression?
biseq beta regression
4.7 years ago akhaira • 0
1
vote
0
replies
1.9k
views
Multiple linear regression model for DMR detection?
methylation linear model dmr bsseq biseq
9.3 years ago enricoferrero ▴ 680
0
votes
1
reply
933
views
testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
4.7 years ago akhaira • 0
0
votes
1
reply
1.3k
views
BiSeq - modelling options betaRegression
biseq RRBS betaregression
8.0 years ago l.eijssen • 0
0
votes
1
reply
1.2k
views
How to convert bedgraph.sorted or wig files to coverage files
bedgraph .cov wig biseq coverage
4.7 years ago akhaira • 0
23 results • Page 1 of 1
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Answer: affy::rma results doesn't match with ncbi website by ATpoint ★ 4.7k
Exact OMCIS reproduction down to the values without code and software version is borderline impossible. Either use the values as provided o…
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You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
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Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…
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It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…
Comment: Can't post a question? by DavideSant • 0
Thank you, this was super useful!
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Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
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