Bioconductor BiocStyle

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Bioconductor PackageType BiocStyle

updated 7 months ago by shepherl 3.9k • written 7 months ago by lavanilla44 • 0

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Glimma BiocStyle

updated 23 months ago by Mike Smith ★ 6.5k • written 23 months ago by neilzhao ▴ 30

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BiocStyle

2.7 years ago ullrich ▴ 20

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BiocStyle

updated 3.7 years ago by Mike Smith ★ 6.5k • written 3.7 years ago by federico.nichetti ▴ 10

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BiocStyle latex

4.0 years ago Freek Manders • 0

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package not available (for R version 3.5.0) BiocStyle

updated 6.1 years ago by Mike Smith ★ 6.5k • written 6.1 years ago by nereidaramirez • 0

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biocstyle float

updated 6.7 years ago by Andrzej Oleś ▴ 750 • written 6.7 years ago by Lescai, Francesco ▴ 380

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BiocStyle vignettes rmarkdown latex News

6.9 years ago • updated 6.8 years ago Andrzej Oleś ▴ 750

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biocstyle Rmarkdown Tutorial

6.9 years ago Wolfgang Huber ★ 13k

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biocstyle vignette

updated 6.9 years ago by Andrzej Oleś ▴ 750 • written 6.9 years ago by Aaron Lun ★ 28k

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biocstyle plotly ggplot2

updated 7.0 years ago by Andrzej Oleś ▴ 750 • written 7.0 years ago by Lluís Revilla Sancho ▴ 730

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biocstyle vignettes build/check error latex

updated 7.5 years ago by Andrzej Oleś ▴ 750 • written 7.5 years ago by Mattia ▴ 10

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biocstyle

updated 7.6 years ago by James W. MacDonald 66k • written 7.6 years ago by ioannis.vardaxis ▴ 30

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biocstyle

updated 7.9 years ago by Andrzej Oleś ▴ 750 • written 7.9 years ago by kevin.rue ▴ 350

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biocstyle

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by kevin.rue ▴ 350

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BiocStyle

updated 9.2 years ago by Andrzej Oleś ▴ 750 • written 9.2 years ago by Guangchuang Yu ★ 1.2k

16 results • Page 1 of 1

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Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k

You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.

Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…

Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k

For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…

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Comment: Most enriched pathway is not expressed when modifying universe parameter

Time-course, comparison of two groups

Answer: Behaviour of featureCounts when quantifying multi-mapping reads

Answer: GESA with certain gene list returns no result with human genom, but many result

Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`

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