Showing : CDF • reset
6
votes
2
replies
1.9k
views
Should I skip the eBayes step when using Limma for Affymetrix miRNA v1 chip?
miRNA cdf probe limma miRNA cdf probe limma
updated 9.7 years ago by 50k • written 9.8 years ago by ★ 13k
3
votes
7
replies
4.3k
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miRNA microarray analysis
microarray cdf
updated 9.1 years ago by 50k • written 9.1 years ago by ▴ 10
2
votes
3
replies
1.8k
views
i need AGI code as my probset
affy cdf probe
8.5 years ago • updated 8.3 years ago Angel ▴ 40
2
votes
4
replies
2.7k
views
makePdInfoPackage for Primeview arrays
BiocViews Annotation Cancer Organism cdf probe affy biocViews BiocViews BiocViews Cancer
updated 10.9 years ago by ★ 3.9k • written 10.9 years ago by ▴ 140
2
votes
5
replies
1.2k
views
Error in get(cdfname, object 'mm430mmentrezgcdf' not found
affy cdf rma
updated 5.5 years ago by ★ 4.0k • written 5.5 years ago by • 0
2
votes
2
replies
2.8k
views
Issue with 'Could not obtain CDF environment' after attempting to extract information out of an AffyBatch object
Affy cdf .cel
updated 6.2 years ago by 66k • written 6.2 years ago by • 0
2
votes
2
replies
1.3k
views
problem with custom cdf
microarray affy hgu133plus2 annotation cdf
updated 9.4 years ago by 66k • written 9.5 years ago by • 0
1
vote
3
replies
3.0k
views
How to analyse clariom d human files
limma pdinfobuilder affy cdf
7.2 years ago yusuf.khan ▴ 10
1
vote
4
replies
2.9k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 10.4 years ago by 66k • written 10.4 years ago by ★ 13k
1
vote
1
reply
1.8k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 10.6 years ago by 66k • written 10.6 years ago by ▴ 80
1
vote
4
replies
4.7k
views
Affymetrix Human Gene 1.0 ST Array
Infrastructure cdf probe affy Infrastructure cdf probe affy
16.1 years ago • updated 16.0 years ago Hans-Ulrich Klein ▴ 330
1
vote
1
reply
1.1k
views
altcdfenvs get wrapCdfEnvAffy error
software error microarray cdf
updated 8.8 years ago by 66k • written 8.8 years ago by ▴ 930
1
vote
0
replies
790
views
Binary CEL and CDF files
cdf affy cdf affy
20.1 years ago PARK,CHRISTOPHER CHANGSUN ▴ 50
1
vote
0
replies
896
views
RmiR, request for new package
miRNA Annotation GO cdf probe PROcess Category miRNA Annotation GO cdf probe PROcess
15.2 years ago Nishant Gopalakrishnan ▴ 340
1
vote
5
replies
1.8k
views
CDf files in R
affy CDF
updated 4.6 years ago by 66k • written 4.6 years ago by • 0
0
votes
0
replies
606
views
promotor tilingArray
cdf probe cdf probe
17.9 years ago Ron Ophir ▴ 270
0
votes
0
replies
1.1k
views
Error with CDF environment when using combineAffyBatch of pac kage matchprobes - mas5
Normalization cdf affy matchprobes Normalization cdf affy matchprobes
18.2 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
0
votes
0
replies
771
views
alt cdf env probe index config problem
GO cdf probe affy GO cdf probe affy
19.5 years ago Rhonda DeCook ▴ 90
0
votes
0
replies
866
views
PLIER affinities redux
ath1121501 cdf probe Biobase affy plier ath1121501 cdf probe Biobase affy plier
18.6 years ago Matthew Hannah ▴ 940
0
votes
2
replies
1.1k
views
Matchprobe package
cdf probe gcrma cdf probe gcrma
updated 18.7 years ago by ▴ 120 • written 18.7 years ago by ★ 13k
0
votes
1
reply
1.7k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 19.6 years ago by ★ 5.5k • written 19.6 years ago by ▴ 100
0
votes
0
replies
1.2k
views
Release of Bioconductor 1.3
Microarray Annotation Normalization GO Classification Regression Cancer hgu95a cdf probe
20.6 years ago A.J. Rossini ▴ 810
0
votes
0
replies
808
views
QC report
cdf affy affyQCReport cdf affy affyQCReport
15.8 years ago Yisong Zhen ▴ 10
0
votes
8
replies
1.7k
views
questions about altcdfenv
GO yeast2 cdf probe GO yeast2 cdf probe
updated 15.6 years ago by ★ 2.0k • written 15.6 years ago by ▴ 160
0
votes
1
reply
1.5k
views
SimpeAffy: how to get/generate qcdef file?
cdf probe affy simpleaffy cdf probe affy simpleaffy
updated 15.3 years ago by ▴ 30 • written 15.3 years ago by ▴ 170
0
votes
2
replies
1.3k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 15.2 years ago by ★ 1.2k • written 15.2 years ago by ▴ 20
0
votes
0
replies
1.0k
views
Bioconductor
cdf affy affyPara cdf affy affyPara
13.6 years ago Valerie Obenchain ★ 6.8k
0
votes
1
reply
1.7k
views
Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy GSEABase hu6800 cdf multtest
updated 13.5 years ago by 25k • written 13.5 years ago by ▴ 20
0
votes
2
replies
1.6k
views
FW: PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 13.5 years ago by ▴ 120 • written 13.5 years ago by ▴ 10
0
votes
0
replies
1.5k
views
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
13.4 years ago Roman ▴ 20
0
votes
0
replies
748
views
Pd info package affy 10K array
Microarray Annotation Network Cancer cdf probe affy Microarray Annotation Network Cancer
15.9 years ago Henrik Bengtsson ★ 2.4k
0
votes
1
reply
752
views
problems with pdInfoBuilder
cdf pdInfoBuilder cdf pdInfoBuilder
updated 16.2 years ago by 66k • written 16.2 years ago by ▴ 10
0
votes
0
replies
769
views
Réf. : Re: Missing probesets ~ commentary from the cheap seats ...
cdf probe cdf probe
19.0 years ago Malick.PAYE@eu.biomerieux.com ▴ 110
0
votes
0
replies
771
views
How to remove some probes from one probeset in the begining?
cdf probe cdf probe
16.2 years ago pkuonline ▴ 30
0
votes
0
replies
1.8k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
16.8 years ago Min Wook Kim ▴ 20
0
votes
3
replies
1.3k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 19.0 years ago by 66k • written 19.0 years ago by ▴ 40
0
votes
3
replies
1.2k
views
INstalling devel version
Microarray Pharmacogenomics Annotation GO Cancer cdf probe affy makecdfenv limma annaffy
19.8 years ago Mayte Suarez-Farinas ▴ 300
0
votes
8
replies
2.4k
views
CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 11.5 years ago by 66k • written 11.5 years ago by ▴ 290
0
votes
1
reply
1.2k
views
Error: cannot allocate vector of size 618.0 Mb
Annotation cdf Annotation cdf
updated 11.5 years ago by ▴ 580 • written 11.5 years ago by ▴ 20
0
votes
3
replies
1.5k
views
GWATools use in creating ncdf files
SNP cdf GWASTools SNP cdf GWASTools
updated 11.0 years ago by ▴ 60 • written 11.0 years ago by ▴ 870
0
votes
5
replies
1.8k
views
GWATools use in creating ncdf files
SNP Annotation cdf GWASTools SNP Annotation cdf GWASTools
updated 11.0 years ago by ▴ 60 • written 11.0 years ago by ▴ 870
0
votes
2
replies
1.1k
views
Rat St gene array 2.0
Cancer cdf Cancer cdf
updated 11.0 years ago by ▴ 10 • written 11.0 years ago by ▴ 170
0
votes
5
replies
1.7k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
10.8 years ago Alan Smith ▴ 150
0
votes
9
replies
2.7k
views
frma and alternative CDFs
GO cdf frma BRAIN GO cdf frma BRAIN
updated 9.8 years ago by ▴ 830 • written 9.8 years ago by ★ 13k
0
votes
5
replies
2.0k
views
Using custom CDF with 'make.cdf.env'
miRNA cdf probe miRNA cdf probe
updated 9.7 years ago by ▴ 130 • written 9.7 years ago by ★ 13k
0
votes
0
replies
1.3k
views
Bioconductor 1.8 for R 2.3.0 is released!
BiocViews aCGH SNP Microarray Annotation GO Clustering Cancer Yeast cdf probe RMAGEML
18.1 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
983
views
Affymetrix exon arrays?
Normalization Cancer Breast cdf affy PROcess Normalization Cancer Breast cdf affy
updated 17.6 years ago by ▴ 20 • written 17.6 years ago by ▴ 310
0
votes
1
reply
764
views
Affy Human Gene ST1.0 cdf?
cdf cdf
updated 16.5 years ago by 66k • written 16.5 years ago by ▴ 320
0
votes
2
replies
1.1k
views
Affy and Custom CDF files
cdf probe cdf probe
updated 21.2 years ago by ★ 2.3k • written 21.2 years ago by ▴ 70
0
votes
2
replies
1.2k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 12.3 years ago by 66k • written 12.3 years ago by ▴ 630
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Comment: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.1k
Hi, What do you get if you run the following `httr::HEAD()` command? I noticed that you have `libcurl` version 8.3.0 from `curl::curl_vers…
Comment: Slightly different count plots from R and spreadsheet by boczniak767 ▴ 720
Thank you @mikelove for your patience and kind advice. So I assume the plots from R are valid. Best wishes.
Answer: Help with infinite recursion - non-zero exit status in installation of GenomeInf by James W. MacDonald 66k
Maybe just try again? ``` > install("GenomeInfoDbData", force = TRUE) 'getOption("repos")' replaces Bioconductor standard repositorie…
Comment: Help with infinite recursion - non-zero exit status in installation of GenomeInf by Brandon • 0
Hello, As an update, I am able to install and load GenomeInfoDb successfully in a fresh renv in my WSL distro. However, I'm not sure what …
Comment: slingshot: error with plot3d.SlingshotDataSet by Kelly Street • 0
This issue has been addressed [on GitHub][1]. [1]: https://github.com/kstreet13/slingshot/issues/249
Votes
Comment: recount3 problem downloading data from source sra
Answer: Slightly different count plots from R and spreadsheet
Including squared covariates to account for non-linear dependencies in differential gene expression analysis
DESeq2 DE gene expression of scRNA-seq pseudobulk
Answer: Multiple factor DSEq2 result generates weird volcano plot
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