Showing : CGH • reset
0
votes
1
reply
977
views
array CGH software
CGH CGH
written 17.4 years ago by ▴ 10
1
vote
2
replies
2.6k
views
Columns used by read.maimages for Agilent arrays
Annotation CGH limma
12.4 years ago • updated 7.2 years ago Gordon Smyth 52k
2
votes
3
replies
1.4k
views
read.maimages
Annotation CGH limma Annotation CGH limma
updated 7.2 years ago by 52k • written 12.4 years ago by ★ 1.5k
0
votes
0
replies
888
views
How to combine CGHcall objects
cghcall r cgh copy number
7.6 years ago kitcurtius • 0
5
votes
3
replies
1.8k
views
Classes and methods for working with segmented copy number data
cgh copynumber
updated 7.8 years ago by 700 • written 8.4 years ago by 21k
0
votes
0
replies
970
views
problem in doing aCGH+SNP analysis
cgh
9.7 years ago kajayh • 0
0
votes
1
reply
1.7k
views
Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray Annotation CGH snapCGH Microarray Annotation CGH snapCGH
updated 10.4 years ago by 21k • written 10.4 years ago by ★ 13k
0
votes
0
replies
876
views
analyses of CGH data
Microarray CGH Microarray CGH
11.2 years ago Isha Pandey Phd Scholar BITS Pilani Cam… ▴ 10
0
votes
0
replies
1.4k
views
Chr Info for array CGH - agilent 60K
CGH CGH
11.4 years ago Cian Murphy ▴ 40
0
votes
0
replies
965
views
snapCGH and clonesinfo
CGH limma snapCGH CGH limma snapCGH
11.6 years ago Juliet Hannah ▴ 360
0
votes
1
reply
1.5k
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 13.0 years ago by 25k • written 13.0 years ago by ▴ 280
0
votes
1
reply
1.5k
views
CGHweb and cghFLasso
CGH CGH
updated 13.3 years ago by 6.7k • written 13.3 years ago by ▴ 80
0
votes
3
replies
2.6k
views
Script to save plots in Pdf format ( DNAcopy)
CGH PROcess CGH PROcess
updated 13.8 years ago by ▴ 750 • written 13.8 years ago by ▴ 280
0
votes
0
replies
1.6k
views
seeking advice on analyzing CGH data
aCGH CGH aCGH aCGH CGH aCGH
14.2 years ago Paul Shannon ★ 1.1k
0
votes
0
replies
994
views
how to import Agilent CGH custom design xml file into limma
Normalization CGH probe limma Normalization CGH probe limma
14.2 years ago Sean Davis 21k
0
votes
1
reply
1.8k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 14.2 years ago by 21k • written 14.2 years ago by ▴ 110
0
votes
2
replies
1.4k
views
memory limit
CGH trigger CGH trigger
updated 14.3 years ago by ★ 13k • written 14.3 years ago by ▴ 100
0
votes
1
reply
1.5k
views
aCGH...'Genomic events'
CGH CGH
updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 10
0
votes
1
reply
1.4k
views
limma Agilent Normalization
Normalization CGH Normalization CGH
updated 14.6 years ago by 21k • written 14.6 years ago by ▴ 100
0
votes
0
replies
1.1k
views
CGHcall problem
CGH CGHcall CGH CGHcall
14.7 years ago Erik Dassi ▴ 10
0
votes
2
replies
1.7k
views
Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 14.7 years ago by ▴ 450 • written 14.7 years ago by ▴ 80
0
votes
7
replies
1.6k
views
CGH analysis without genome positions
CGH CGH
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 70
0
votes
1
reply
1.7k
views
CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 15.0 years ago by ★ 2.9k • written 15.0 years ago by ★ 1.1k
0
votes
2
replies
1.5k
views
Calling genes present or absent in CGH data
CGH limma CGH limma
updated 15.0 years ago by 21k • written 15.0 years ago by ▴ 70
0
votes
0
replies
1.4k
views
Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
15.2 years ago Patrick Aboyoun ★ 1.6k
0
votes
0
replies
1.2k
views
problems with snapCGH readPositionalInfo processCGH
CGH snapCGH CGH snapCGH
15.3 years ago Dick Beyer ★ 1.4k
0
votes
1
reply
1.0k
views
rtracklayer browserView
CGH rtracklayer CGH rtracklayer
15.3 years ago Giulio Di Giovanni ▴ 540
0
votes
0
replies
1.2k
views
general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
15.4 years ago Wolfgang RAFFELSBERGER ▴ 140
0
votes
1
reply
1.1k
views
NimbleGen HG18 CGH data
aCGH CGH aCGH aCGH CGH aCGH
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 10
0
votes
0
replies
887
views
error in runBioHMM() (package snapCGH)
CGH snapCGH CGH snapCGH
15.7 years ago Wolfgang Raffelsberger ▴ 160
0
votes
1
reply
961
views
How to run bioHMM on Affymetrix data?
CGH CGH
updated 15.7 years ago by ▴ 550 • written 15.7 years ago by ▴ 30
0
votes
2
replies
1.3k
views
How to display chromosome rapresentation ?
CGH impute CGH impute
updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 540
0
votes
1
reply
1.1k
views
Where to download annotation package for Agilent human CGH 44B
Annotation CGH Annotation CGH
updated 15.9 years ago by ★ 7.2k • written 15.9 years ago by ▴ 190
0
votes
0
replies
1.1k
views
Annotation package for Agilent human CGH 44B
Annotation CGH Homo sapiens Annotation CGH Homo sapiens
15.9 years ago Daren Tan ▴ 190
0
votes
1
reply
1.5k
views
A CGH platform question
SNP Genetics Coverage CGH affy SNP Genetics Coverage CGH affy
updated 16.1 years ago by ★ 2.4k • written 16.1 years ago by ▴ 70
0
votes
1
reply
855
views
CGH analysis in non-model organism
CGH CGH
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 30
0
votes
5
replies
1.4k
views
quality assessment and preprocessing for tiling array-based CGH data
CGH probe CGH probe
updated 16.2 years ago by 21k • written 16.2 years ago by ▴ 110
0
votes
0
replies
1.8k
views
Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP Genetics Pathways Cancer CGH microRNA SNP Genetics Pathways Cancer CGH microRNA
16.3 years ago Florian Markowetz ▴ 20
0
votes
1
reply
1.1k
views
normexp error (while using snapCGH)
CGH snapCGH CGH snapCGH
updated 16.3 years ago by ▴ 340 • written 16.3 years ago by ▴ 340
0
votes
1
reply
1.3k
views
Agilent Human Genome CGH 44K annotation
Annotation Cancer CGH Annotation Cancer CGH
updated 16.3 years ago by 21k • written 16.3 years ago by ★ 1.9k
0
votes
9
replies
2.0k
views
gains and losses via mode shifting
Cancer CGH Cancer CGH
16.5 years ago Oscar Rueda ▴ 60
0
votes
0
replies
811
views
snapCGH package - processCGH
CGH CGH
16.5 years ago Henrique Proença ▴ 80
0
votes
5
replies
1.4k
views
gains and losses via mode shifting
CGH CGH
updated 16.5 years ago by 21k • written 16.5 years ago by ▴ 830
0
votes
2
replies
1.2k
views
cross species CGH Nimblegene arrays
CGH CGH
updated 16.7 years ago by ▴ 70 • written 16.7 years ago by ▴ 30
0
votes
0
replies
952
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
16.7 years ago mb23 ▴ 30
0
votes
2
replies
1.1k
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 30
0
votes
0
replies
1.3k
views
New Bioconductor package: rtracklayer
Sequencing Annotation CGH GenomeGraphs rtracklayer Sequencing Annotation CGH GenomeGraphs
16.7 years ago Michael Lawrence ▴ 620
0
votes
2
replies
1.0k
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
updated 16.8 years ago by ▴ 340 • written 16.8 years ago by 21k
0
votes
0
replies
739
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
16.8 years ago Sean Davis 21k
0
votes
1
reply
1.2k
views
array CGH - raw data analysis
CGH CGH
updated 16.9 years ago by 21k • written 16.8 years ago by ▴ 500
50 results • Page 1 of 1
Recent ...
Replies
Comment: EuroBioC2023 abstract submission closing soon! by Jeremy • 0
Thanks for the reminder! If you're a Bioconductor user or developer, make sure to [tabs][1] submit your abstract by the deadline, Monday, A…
Comment: Mean variance curve troubleshoot filtering by gingergeiger22 • 0
Gordon, thank for your response. 'filterByExpr()' was marginally better. I can see high variability in samples within the groups from the M…
Comment: What is the importance of `--countReadPairs` in featureCounts on paired end data by rohitsatyam102 ▴ 20
Since I don't know which organism you are working on, I would recommend using the following: `-s 0` if library is unstranded `-C` Discard…
Comment: What is the importance of `--countReadPairs` in featureCounts on paired end data by rohitsatyam102 ▴ 20
Yes use this option. It is recommended for PE and if you don't use it you will observe nearly twice the number of counts in your results. H…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0
I edited the previous post. I meant to remove the estimateGLMRobustDisp line in the second snipper : ```` DGE_list_object <- estimateGLMR…
Votes
Comment: Comparing different method for DESEQ2
Answer: How do I fix an odd voom plot in a combined dataset?
Answer: How do I fix an odd voom plot in a combined dataset?
Comment: How do I fix an odd voom plot in a combined dataset?
C: How does edgeR cpm function calculate log(CPM) values?
Awards • All
Popular Question to Ken C • 0
Popular Question to gingergeiger22 • 0
Popular Question to Gordon Smyth 52k
Popular Question to James W. MacDonald 67k
Popular Question to Chris ▴ 20
Locations • All
EMBL Heidelberg, 10 minutes ago
Portugal, 56 minutes ago
Denmark, 1 hour ago
United States, 3 hours ago
United States, 3 hours ago
Traffic: 861 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6