Showing : Cytoscape • reset
6
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8
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8.3k
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WGCNA export to cytoscape
wgcna cytoscape
updated 6.3 years ago by ▴ 60 • written 7.0 years ago by ▴ 60
3
votes
4
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1.4k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.0 years ago Matthew Thornton ▴ 350
3
votes
7
replies
1.2k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
12 months ago Ortega-C ▴ 10
1
vote
0
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1.7k
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Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
5.6 years ago lm795 ▴ 10
1
vote
1
reply
283
views
Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 4 months ago by ▴ 20 • written 4 months ago by ▴ 90
0
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1
reply
1.2k
views
WGNA export to external software
WGCNA network visualization external software cytoscape
updated 6.6 years ago by ★ 3.0k • written 6.6 years ago by • 0
0
votes
1
reply
740
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 3.4 years ago by ▴ 20 • written 3.8 years ago by • 0
0
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0
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829
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
15 months ago gianni.drm • 0
0
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0
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1.0k
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Help with generating network from gene expression data
gene expression network cytoscape
6.3 years ago torgeirous • 0
9 results • Page 1 of 1
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Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE by maria.soler • 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Answer: Differential gene expression analysis results by ATpoint ★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results by sajadahmad41454 • 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Votes
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Comment: deseq2 results
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