Bioconductor DE

Showing : DE • reset

votes

replies

1.9k

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limma microarray hugeneST batch effect DE

updated 5.3 years ago by Ryan C. Thompson ★ 7.9k • written 5.3 years ago by svlachavas ▴ 830

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2.0k

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limma model.matrix de design rnaseq

updated 3.9 years ago by Gordon Smyth 50k • written 3.9 years ago by Will • 0

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2.2k

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go de enrichment rnaseq goana

updated 4.1 years ago by Gordon Smyth 50k • written 4.1 years ago by Raito92 ▴ 60

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2.0k

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go DE edger rnaseq glmTreat

updated 4.1 years ago by Gordon Smyth 50k • written 4.1 years ago by Raito92 ▴ 60

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2.1k

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deseq rna-seq filtering DE deseq2

updated 4.1 years ago by Michael Love 42k • written 4.1 years ago by svlachavas ▴ 830

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1.3k

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edger deseq2 rnaseq de

updated 4.1 years ago by Gordon Smyth 50k • written 4.1 years ago by Raito92 ▴ 60

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1.7k

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DESeq2 DE normalization

6.8 years ago mario.keller.1988 ▴ 20

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1.7k

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deseq2 DE DEG

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by hermanapis • 0

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3.2k

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batch effect limma rna seq DE

updated 4.0 years ago by Steve Lianoglou ★ 13k • written 4.0 years ago by svlachavas ▴ 830

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1.3k

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edger design matrix de

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by takumima ▴ 10

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1.4k

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sce markers single cell DE clusters

4.6 years ago ludmi.b • 0

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1.0k

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deseq2 nested de

updated 4.5 years ago by Michael Love 42k • written 4.5 years ago by gaio.transposon • 0

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1.7k

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monocle cummerbund DE rnaseq

updated 8.8 years ago by ksekine • 0 • written 9.1 years ago by Jon Bråte ▴ 250

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1.2k

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limma DE

updated 7.2 years ago by svlachavas ▴ 830 • written 7.2 years ago by Dave • 0

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2.7k

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scRNA-seq Seurat DE

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by ilee8 • 0

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3.4k

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deseq2 DE rnaseq sva combat

updated 8.3 years ago by Michael Love 42k • written 8.3 years ago by mbio.kyle • 0

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642

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deseq2 DE

updated 5.3 years ago by Michael Love 42k • written 5.3 years ago by lkianmehr • 0

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952

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ballgown R RNAseq DE interactions

updated 5.9 years ago by James W. MacDonald 65k • written 5.9 years ago by khill33 • 0

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920

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limma de differential gene expression multi-tissue design multi-level design

updated 4.1 years ago by Aaron Lun ★ 28k • written 4.1 years ago by kdiamanti • 0

19 results • Page 1 of 1

Recent ...

Replies

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…

Answer: meffil.snp.concordance by James W. MacDonald 65k

This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…

Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…

Votes

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu

Answer: Extremely small p-values using Limma for proteomic data

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

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