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Answer: Store output of matchPWM()
by
James W. MacDonald
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Something like this?
```
ind <- as.logical(sapply(hitlist, length))
out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges")))
…
Answer: log2FoldChange value is way too different when compared with counts(dds)
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Michael Love
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This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…
Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
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James W. MacDonald
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You don't say what array that is, so I will guess.
```
> library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19)
> Locations
DataFrame…
Answer: SGSeq: moving toward diffex from SGSeq analysis
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Leonard Goldstein
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`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma
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Chris
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Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
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