Showing : DESEQ2 • reset
0
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3
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705
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log2FoldChange value is way too different when compared with counts(dds)
DESeq2
updated 18 months ago by 43k • written 18 months ago by • 0
3
votes
1
reply
876
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind ChIPSeqData DESeq2
updated 18 months ago by 43k • written 18 months ago by ▴ 10
0
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2
replies
982
views
Timecourse RNASeq analysis
DESeq2 ImpulseDE2 timecour timecoursedata moanin
18 months ago Aurora • 0
0
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1
reply
565
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Padj "NA" with thousands of low count although the raw read counts are quite large
DESeq2
updated 18 months ago by 43k • written 18 months ago by • 0
0
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1
reply
456
views
putting my own expression data in deseq2
DESeq2
updated 18 months ago by ★ 5.0k • written 18 months ago by • 0
3
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3
replies
1.1k
views
DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
DESeq2 contrasts
updated 18 months ago by ★ 5.0k • written 18 months ago by ▴ 10
0
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2
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728
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PCA plot suggestions
DESeq2 PCAtools
updated 18 months ago by 43k • written 19 months ago by • 0
1
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3
replies
1.1k
views
Deseq2. decontXcounts not integers. Useful alternative?
DESeq2 celda
updated 18 months ago by 43k • written 19 months ago by • 0
2
votes
9
replies
1.8k
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 19 months ago by 68k • written 19 months ago by • 0
0
votes
1
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842
views
DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
DESeq2 RNAseq
updated 19 months ago by 43k • written 19 months ago by • 0
1
vote
3
replies
748
views
Different Shrunk Log2FC according with reference
DESeq2
updated 19 months ago by 43k • written 19 months ago by ▴ 20
1
vote
4
replies
1.1k
views
Opposite sign of LFC in count plots of DEGs (DESeq2)
DESeq2
19 months ago winwater0928 • 0
3
votes
1
reply
867
views
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
DESeq2
updated 19 months ago by 43k • written 19 months ago by ▴ 40
0
votes
7
replies
2.7k
views
DESeq2 output used for PCA plot on R studio
DESeq2 RSTUDIO PCAtools
updated 19 months ago by ★ 1.4k • written 19 months ago by • 0
3
votes
3
replies
1.1k
views
DESeq2 - dispersion estimation when there is none
DESeq2
updated 19 months ago by 43k • written 19 months ago by • 0
0
votes
1
reply
453
views
rlog transformation
DESeq2
updated 19 months ago by 43k • written 19 months ago by • 0
0
votes
1
reply
1.2k
views
ONT long-read RNA sequencing - data analysis options
DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq
updated 19 months ago by 43k • written 19 months ago by • 0
1
vote
2
replies
3.4k
views
DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
DESeq2
19 months ago • updated 18 months ago Patadù ▴ 20
0
votes
1
reply
429
views
covariate with negative and positive values
DESeq2
updated 19 months ago by 43k • written 19 months ago by • 0
0
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1
reply
445
views
DESEQ2 output gives multiple groups when only 2 groups are present
DESeq2
updated 19 months ago by ★ 5.0k • written 19 months ago by • 0
0
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4
replies
943
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind DESeq2 ATACSeq
19 months ago lonn • 0
0
votes
3
replies
743
views
Interaction Terms in DESeq2 - Shrinkage
DESeq2
updated 19 months ago by 43k • written 19 months ago by ▴ 20
1
vote
2
replies
936
views
How to retrieve detailed regression results from deseq2
DESeq2
19 months ago Weiqian ▴ 10
0
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4
replies
948
views
DEG with low counts
DESeq2
updated 19 months ago by 43k • written 19 months ago by • 0
0
votes
1
reply
411
views
Deseq2 Rlog transformation
DESeq2
updated 19 months ago by ★ 5.0k • written 19 months ago by • 0
1
vote
2
replies
784
views
Design Matrix within group comparison more than two groups
DESeq2
19 months ago hemantcnaik • 0
0
votes
1
reply
614
views
Bioinformatics student
Des DESeq2
updated 19 months ago by • 0 • written 19 months ago by • 0
0
votes
1
reply
750
views
DESeq2 gives an error and R crashes
DESeq2
19 months ago Shefali • 0
0
votes
2
replies
815
views
Interaction term vs grouping variable design considerations
DESeq2 DifferentialExpression
updated 19 months ago by 43k • written 19 months ago by ▴ 70
0
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1
reply
835
views
IgG control in RIP-seq with Deseq2
DESeq2 RIP-seq
updated 19 months ago by 43k • written 19 months ago by • 0
0
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2
replies
758
views
Regressing out batch effects
DESeq2
updated 19 months ago by 43k • written 19 months ago by • 0
0
votes
2
replies
1.0k
views
What to the log 2 fold changes mean using LRT on time course in DESeq2
DESeq2 timecourse DifferentialExpression
updated 19 months ago by 68k • written 19 months ago by • 0
1
vote
1
reply
830
views
DESeq2 - Missing values in count matrix
DESeq2
updated 19 months ago by 68k • written 19 months ago by • 0
1
vote
6
replies
1.6k
views
DESeq2 step-by-step Normalization then DGE separately & Normalization methods and switchability
DESeq2 Normalization
updated 19 months ago by 43k • written 19 months ago by • 0
1
vote
1
reply
505
views
DESeq2 , filter and theta arguments in resutlts()
DESeq2
19 months ago Layal • 0
0
votes
2
replies
727
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pca with VST of DESeq2 give 100% variance in PC1
DESeq2 sva
19 months ago michelafrancesconi8 • 0
0
votes
4
replies
1.1k
views
Abnormal Low Dispersion Gene Population in DESeq2
DESeq2
updated 19 months ago by 43k • written 19 months ago by • 0
0
votes
1
reply
436
views
New genes that did not exist in dds object suddenly showed up after degPatterns
DESeq2
updated 19 months ago by 43k • written 19 months ago by • 0
2
votes
4
replies
1.3k
views
PCA of different bacterial species
DESeq2
written 20 months ago by ▴ 10
0
votes
1
reply
597
views
collapseReplicates dimension error
DESeq2 Dese
updated 20 months ago by 43k • written 20 months ago by • 0
3
votes
2
replies
764
views
How to extract counts from a DESeq dataset ordered by a specific sample?
DESeq2 Transcriptomics
20 months ago Anita ▴ 10
1
vote
2
replies
870
views
DESeq2 "Contrast" option
DESeq2 contrast DifferentialExpression
20 months ago • updated 19 months ago Chanderkant Chaudhary • 0
0
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2
replies
2.0k
views
Filtering and Reference Level for DESeq2
DESeq2 GeneFiltering RNAseq
20 months ago kcarey • 0
2
votes
3
replies
818
views
DESeq2 - Plot Nr. Genes vs Variance explained in PCA
DESeq2
updated 20 months ago by 43k • written 20 months ago by ▴ 20
0
votes
3
replies
929
views
Help with Complex DESeq2 Design
DESeq2
updated 20 months ago by ★ 5.0k • written 20 months ago by • 0
1
vote
1
reply
699
views
Need help with creating and plotting temporal clustering analysis of DEGs
DESeq2 ctsGE
updated 20 months ago by 43k • written 20 months ago by • 0
0
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1
reply
441
views
Help with DESeqDataSetFromHTSeqCount
DESeq2 RSeqAn
updated 20 months ago by 43k • written 20 months ago by • 0
0
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1
reply
1.5k
views
lfcShrink error: the line search routine failed
apeglm DESeq2
updated 20 months ago by 43k • written 20 months ago by • 0
2
votes
2
replies
772
views
With DESeq2 "Not full rank" Error with design
DESeq2 DEs
20 months ago feather-W • 0
0
votes
2
replies
1.2k
views
Missing Band on Volcano Plot from DESeq2
DESeq2 Visualization DifferentialExpression
updated 20 months ago by 43k • written 20 months ago by • 0
4,838 results • Page 6 of 97
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