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DEXseq
•
reset
2
votes
4
replies
1.9k
views
DEXSeqHTML doesn't creates plots
dexseq
DEXSeqHTML
data representation in graphical forms
warning message
9.9 years ago
Assa Yeroslaviz
★ 1.5k
4
votes
4
replies
3.3k
views
DEXSeq and Independent filtering
dexseq
deseq2
genefilter
updated 9.9 years ago by
Wolfgang Huber
★ 13k • written 9.9 years ago by
Joseph Bundy
▴ 20
1
vote
4
replies
1.8k
views
DEXSeq Error when calculating Exon Fold-changes
dexseq
logfoldchange
exon usage
9.9 years ago
Assa Yeroslaviz
★ 1.5k
1
vote
1
reply
1.4k
views
DEXSeq: pvalue for multiple conditions
dexseq
updated 9.9 years ago by
Alejandro Reyes
★ 1.9k • written 9.9 years ago by
Jason.Y
• 0
1
vote
3
replies
1.6k
views
DEXSeqHTML filenames gone wrong
dexseq
updated 9.9 years ago by
Alejandro Reyes
★ 1.9k • written 10.4 years ago by
jannetta.steyn
▴ 10
5
votes
6
replies
3.0k
views
Translating model formula from DESeq to DEXSeq
dexseq
linear model
formula
updated 10.0 years ago by
Alejandro Reyes
★ 1.9k • written 10.0 years ago by
Cornwell, Adam
▴ 110
3
votes
4
replies
2.7k
views
having trouble with dexseq_prepare_annotation.py
dexseq
gtf
updated 10.0 years ago by
Alejandro Reyes
★ 1.9k • written 10.0 years ago by
vakul.mohanty
▴ 20
2
votes
5
replies
1.9k
views
proper way to subset columns of a DEXSeqDataset object
DEXSeq
10.0 years ago
Narayanan, Manikandan NIH/NIAID [E]
▴ 60
0
votes
0
replies
1.9k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
10.0 years ago
Fiona
▴ 70
0
votes
5
replies
2.7k
views
DEXSeq - Error in estimateSizeFactorsForMatrix(featureCounts(object)
DEXSeq
DESeq2
dexseq
deseq2
alternative splicing
10.1 years ago
Fahmi Nazarie
• 0
0
votes
0
replies
1.1k
views
dexseq for DE circRNA
dexseq
10.1 years ago
ernesto.picardi
• 0
1
vote
1
reply
1.5k
views
DEXSeq analysis for paired samples
DEXSeq
DEXSeq
updated 10.1 years ago by
niazi84
• 0 • written 11.8 years ago by
Philip Jonsson
▴ 20
0
votes
2
replies
4.1k
views
DEXSeq on FeatureCounts output
dexseq
featurecounts
10.1 years ago
Vivek.b
▴ 100
0
votes
3
replies
2.4k
views
Query about DEXSeq
dexseq
batch effect
PCA
10.1 years ago
n.deshpande
• 0
0
votes
2
replies
1.7k
views
Using merged alignments of PE readlists for DEXSeq
dexseq
paired
rnaseq
samtools merge
updated 10.2 years ago by
Alejandro Reyes
★ 1.9k • written 10.2 years ago by
arom2
• 0
1
vote
6
replies
2.0k
views
Eliminating minor exon bins from DEXSeq / associated python scripts
dexseq
deseq2
10.2 years ago
np
▴ 10
0
votes
2
replies
2.1k
views
DEXSeq prepare_annotation.py error
DEXseq
gff
prepare annotation
gtf
transcript_id
10.2 years ago
arom2
• 0
0
votes
0
replies
1.7k
views
Error: non-character argument in DEXSeqDataSetFromHTSeq from DEXSeq
dexseq
rnaseq
differential exon usage
10.2 years ago
arom2
• 0
1
vote
15
replies
4.6k
views
junction.bed to GTF to use in DEXSeq
junction.bed
DEXSeq
updated 10.2 years ago by
andrew.j.skelton73
▴ 370 • written 10.2 years ago by
rahel14350
▴ 10
2
votes
6
replies
4.0k
views
DEXSeq Error in lf[[1]] : subscript out of bounds
DEXSeq
10.3 years ago • updated 10.2 years ago
rahel14350
▴ 10
0
votes
13
replies
3.9k
views
Efficiently running DEXSeq for Large Cohorts
DEXSeq
DEXSeq
updated 10.3 years ago by
rahel14350
▴ 10 • written 12.8 years ago by
Fong Chun Chan
▴ 320
0
votes
2
replies
1.1k
views
DEXSEq warning when using TRT functions
DEXSeq
DEXSeq
updated 10.3 years ago by
rahel14350
▴ 10 • written 12.3 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
all reads in ambiguous_readpair_position, from dexseq_count.py in DEXseq
dexseq
10.3 years ago
Wu, Di
▴ 120
0
votes
1
reply
990
views
DEXSeq - coordinates of upstream and downstream exon
dexseq
updated 10.3 years ago by
Alejandro Reyes
★ 1.9k • written 10.3 years ago by
komor.gosia
• 0
0
votes
3
replies
2.1k
views
DEXSeqHTML won't run - warning message: In is.na(x): is.na() applied to non-(list or vector) or type NULL.
dexseq
10.3 years ago
Sam McInturf
▴ 300
0
votes
3
replies
2.8k
views
DEXSeq on introns but exon overlap and error message
dexseq
intron retention
prepare annotation
10.3 years ago
mat.lesche
▴ 110
5
votes
18
replies
4.4k
views
Incongruencies between DEXSeq and BitSeq/Cuffdiff
dexseq
bitseq
cuffdiff
Differential exon usage
isoforms
10.4 years ago • updated 10.3 years ago
elle
▴ 10
0
votes
2
replies
1.7k
views
DEXSeq: Testing only a subset of exons
dexseq
10.3 years ago
i.sudbery
▴ 40
0
votes
5
replies
2.6k
views
DEXSeq: 0 reads for all exons for an expressed gene
dexseq
10.4 years ago
Andrea Grilli
▴ 240
0
votes
2
replies
1.8k
views
DEXSeq: How to get expresion value for each exon?
DEXSeq
10.4 years ago
Peter
• 0
1
vote
2
replies
1.7k
views
DEXSeq transcripts per condition
DEXSeq
transcripts
isoforms
updated 10.4 years ago by
Alejandro Reyes
★ 1.9k • written 10.5 years ago by
peter_venhuizen
• 0
4
votes
1
reply
1.7k
views
DEXSeq with mutliple experimental conditions - definig contrasts
DEXSeq
updated 10.4 years ago by
Alejandro Reyes
★ 1.9k • written 10.4 years ago by
biominer
▴ 10
0
votes
1
reply
1.5k
views
DEXSeq job parallelization and memory issue
dexseq
updated 10.4 years ago by
Wolfgang Huber
★ 13k • written 10.5 years ago by
anil.kesarwani
• 0
0
votes
31
replies
5.9k
views
Error in find DEXSeq package
deseq
dexseq
10.5 years ago
engr.yahya602
• 0
0
votes
5
replies
2.5k
views
DEXSeq output "Gene Model"
dexseq
10.5 years ago
atisou
• 0
0
votes
0
replies
1.8k
views
Differential expression workflow for alternative splicing
dexseq
bitseq
spliceR
10.5 years ago
elle
▴ 10
0
votes
2
replies
1.3k
views
DEXSeq exon usage at sample level
dexseq
exon usage
updated 10.6 years ago by
Alejandro Reyes
★ 1.9k • written 10.6 years ago by
Xavier Pastor
▴ 10
0
votes
1
reply
2.2k
views
DEXSeq with multiple conditions
dexseq
alternative splicing
exon skipping
updated 10.6 years ago by
Simon Anders
★ 3.8k • written 10.6 years ago by
ebadr
• 0
2
votes
10
replies
3.3k
views
Undefined log2Foldchanges within DEXSeq for significantly regulated exons
DEXSeq
10.7 years ago
n.kreim
▴ 20
1
vote
1
reply
1.7k
views
Multi factor analysis in DEXSeq
DEXSeq
DESeq2
multiple factor design
formulaFullModel
updated 10.7 years ago by
Simon Anders
★ 3.8k • written 10.7 years ago by
madal
• 0
0
votes
3
replies
2.0k
views
DEXseq padj NA problem
dexseq
updated 10.8 years ago by
Wolfgang Huber
★ 13k • written 10.8 years ago by
bartosovic.marek
• 0
0
votes
3
replies
1.7k
views
DEXSeq results for multiple time points
dexseq
updated 10.8 years ago by
Alejandro Reyes
★ 1.9k • written 10.8 years ago by
igor
▴ 50
0
votes
1
reply
2.0k
views
Count files do not correspond to the flattened annotation file
dexseq
updated 10.8 years ago by
Alejandro Reyes
★ 1.9k • written 10.8 years ago by
so2346
• 0
13
votes
2
replies
5.3k
views
DEXSeq Usage and Expression Confusion
dexseq
updated 10.8 years ago by
Simon Anders
★ 3.8k • written 10.8 years ago by
andrew.j.skelton73
▴ 370
0
votes
1
reply
3.6k
views
Error in estimateDispersions of DEXSeq
DEXSeq
estimateDispersions
updated 10.8 years ago by
Michael Love
43k • written 10.8 years ago by
deeya.saha86
• 0
0
votes
1
reply
1.7k
views
DEXSeq: minCount in estimateDispersions()
dexseq
updated 10.9 years ago by
Alejandro Reyes
★ 1.9k • written 10.9 years ago by
liaojinyue
• 0
3
votes
2
replies
1.6k
views
How to calculate "This" and "Others" exons in DEXseq
dexseq
updated 10.9 years ago by
Alejandro Reyes
★ 1.9k • written 10.9 years ago by
Sindre
▴ 70
0
votes
1
reply
1.8k
views
DEXSeq error: Count files do not correspond to the flattened annotation file
DEXSeq
counts
gff
11.0 years ago
Assa Yeroslaviz
★ 1.5k
4
votes
3
replies
1.7k
views
Custom title for DEXseq plot
dexseq
updated 11.0 years ago by
James W. MacDonald
68k • written 11.0 years ago by
timknutsen
▴ 10
2
votes
3
replies
2.0k
views
DEXSeq for DE of antisense transcription
dexseq
antisense
updated 11.0 years ago by
Wolfgang Huber
★ 13k • written 11.0 years ago by
Alex Gutteridge
▴ 650
363 results • Page
5 of 8
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