Bioconductor DGEList

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625

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DGEList edgeR

16 months ago prity6459 • 0

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961

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edgeR Bioconductor Dseq2 dgelist

updated 2.7 years ago by Gordon Smyth 53k • written 2.7 years ago by Fiona • 0

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1.3k

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factors edgeR setup DGELIst

updated 4.3 years ago by Gordon Smyth 53k • written 4.3 years ago by Alex • 0

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2.4k

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edger DGElist

updated 6.4 years ago by Gordon Smyth 53k • written 6.4 years ago by naser.sadri • 0

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2.2k

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dgelist edger RnaSeqGeneEdgeRQL

updated 7.1 years ago by Gordon Smyth 53k • written 7.1 years ago by Kevin • 0

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2.8k

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edgeR summarizedexperiment dgelist

7.4 years ago aljoscha.leusmann • 0

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1.3k

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tree bootstrap dgelist plotmds

7.5 years ago Larry K. • 0

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2.7k

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edger dgelist NA egsea

updated 7.5 years ago by Gordon Smyth 53k • written 7.5 years ago by belmore • 0

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4.4k

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edger DGEList org.hs.eg.db gene annotation

updated 4.0 years ago by IIart.hubII • 0 • written 7.8 years ago by svlachavas ▴ 840

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3.8k

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egder dgelist group rnaseq

updated 7.8 years ago by Aaron Lun ★ 29k • written 7.8 years ago by fawazfebin ▴ 60

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4.1k

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DGElist filter edgeR

updated 8.2 years ago by Gordon Smyth 53k • written 8.2 years ago by alakatos ▴ 130

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3.2k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 9.1 years ago by Steve Lianoglou ★ 13k • written 9.1 years ago by benedict.ng ▴ 30

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7.6k

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edger subsetting dgelist

updated 9.1 years ago by Gordon Smyth 53k • written 9.1 years ago by mnaymik ▴ 10

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22k

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edgeR row.names DGEList

10.6 years ago ccheung • 0

14 results • Page 1 of 1

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Comment: org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key by thundernight • 0

I'm actually having the same problem. [Spanish dictionary][1] [1]: https://spanishdictionary.cc

Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k

The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…

Comment: voomLmFit fitted log-CPM values by Lina ▴ 10

Is the output from fitted(v) in the log2 CPM scale? or CPM scale?

Answer: voomLmFit fitted log-CPM values by Gordon Smyth 53k

Fitted values are obtained from limma MArrayLM objects by ``` fitted(v) ```

Comment: EuroBioC2024 abstract submission is open! by Finnianfly • 0

What specific requirements should be noted when preparing abstracts for presentation formats such as short talks, package demos, or posters…

Votes

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

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