Bioconductor DGEList

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647

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DGEList edgeR

17 months ago prity6459 • 0

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980

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edgeR Bioconductor Dseq2 dgelist

updated 2.8 years ago by Gordon Smyth 53k • written 2.8 years ago by Fiona • 0

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1.3k

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factors edgeR setup DGELIst

updated 4.4 years ago by Gordon Smyth 53k • written 4.4 years ago by Alex • 0

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2.4k

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edger DGElist

updated 6.5 years ago by Gordon Smyth 53k • written 6.5 years ago by naser.sadri • 0

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2.2k

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dgelist edger RnaSeqGeneEdgeRQL

updated 7.2 years ago by Gordon Smyth 53k • written 7.2 years ago by Kevin • 0

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2.9k

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edgeR summarizedexperiment dgelist

7.5 years ago aljoscha.leusmann • 0

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1.3k

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tree bootstrap dgelist plotmds

7.6 years ago Larry K. • 0

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2.7k

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edger dgelist NA egsea

updated 7.6 years ago by Gordon Smyth 53k • written 7.6 years ago by belmore • 0

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4.4k

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edger DGEList org.hs.eg.db gene annotation

updated 4.0 years ago by IIart.hubII • 0 • written 7.8 years ago by svlachavas ▴ 840

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3.8k

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egder dgelist group rnaseq

updated 7.9 years ago by Aaron Lun ★ 29k • written 7.9 years ago by fawazfebin ▴ 60

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4.1k

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DGElist filter edgeR

updated 8.3 years ago by Gordon Smyth 53k • written 8.3 years ago by alakatos ▴ 130

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3.2k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 9.2 years ago by Steve Lianoglou ★ 13k • written 9.2 years ago by benedict.ng ▴ 30

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7.6k

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edger subsetting dgelist

updated 9.2 years ago by Gordon Smyth 53k • written 9.2 years ago by mnaymik ▴ 10

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22k

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edgeR row.names DGEList

10.7 years ago ccheung • 0

14 results • Page 1 of 1

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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 4.9k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 4.9k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0

The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…

Answer: Gatins Set error by James W. MacDonald 68k

`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.

Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k

Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…

Votes

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

Answer: ordinary t from limma [was: How would I normally compare swirl?]

Comment: readDNAStringSet with non DNA characters

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

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